Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00508 ATGGCGAGGGGGAAGATTCAGATCGAGAGGATCGAGAATCCGACCACCAGGCAGGTCACCTTCTCTAAAAGACGAAAAGGATTGTTCAAGAAGGCGGAGGAGCTCTCTGTTCTCTGCGATGCTCAGGTTTCCATTATTATGTTTTCTGGGACCGGCAAACTCCATGAATATTTCAGCTCCACCACCACGACGAAGGAGTTACTCGATCGTTACCAGAGGGCATTAAATGTTGATCTTTGGAACTCCCATTATGAGAGAATGCAAGAGAGTCTGAGGAAGCTGAAAGAAGTCAACTGGAATCTCCGAACGCAGATAAGGCAAAGGGTCGGCCAATGTCTCGACGATCTGAACTTCGAAGAACTGCTTCGTCTTGAACAGGATATGGAAGATGGTGTCAAGTCTATTCGGGAACGCAAGTTCAAGGTGCTGGAAACTGAGTATAATAAACACAGGAAAAAGTTCAAGAACGAGGAAGATGTACACAGAAGCATTCTCCATGAATTTGAGGTGGCAATGGAGGAAGATCCACAGTATAGAGGGGTTAAGGTCGAGGGCGGAGGAGGTTACGGCGCCATTGTTGGATTCTCAAACGGAGGTCCACATTTATTTGCACTCCGGCTGCAACACACCCAGCTTCATCCCGCCGGAGCCGGATCGGATGGGAGAACTTATCCCTTGCTTGAGTAG 687 48.33 MARGKIQIERIENPTTRQVTFSKRRKGLFKKAEELSVLCDAQVSIIMFSGTGKLHEYFSSTTTTKELLDRYQRALNVDLWNSHYERMQESLRKLKEVNWNLRTQIRQRVGQCLDDLNFEELLRLEQDMEDGVKSIRERKFKVLETEYNKHRKKFKNEEDVHRSILHEFEVAMEEDPQYRGVKVEGGGGYGAIVGFSNGGPHLFALRLQHTQLHPAGAGSDGRTYPLLE 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32066294 32067532 - Bda002513.1 Bda01g00508 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00508 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda01g00508 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda01g00508 228 Coils Coil 84 104 - -
Bda01g00508 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Bda01g00508 228 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Bda01g00508 228 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bda01g00508 228 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g00508 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda01g00508 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda01g00508 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda01g00508 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda01g00508 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bda01g00508 228 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g00508 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda01g00508 228 PANTHER APETALA3 1 225 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00508 Bda03g00275 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00508 Bda-Chr1:32066294 Bda04g00032 Bda-Chr4:528368 3.28E-63 dispersed
Bda15g00490 Bda-Chr15:8043975 Bda01g00508 Bda-Chr1:32066294 2.81E-26 dispersed
Bda01g00508 Bda-Chr1:32066294 Bda03g00275 Bda-Chr3:2412161 6.31E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15355 PF01486 K-box 1.40E-16 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00508 K09264 - csin:114263054 275.404