Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g00508 | ATGGCGAGGGGGAAGATTCAGATCGAGAGGATCGAGAATCCGACCACCAGGCAGGTCACCTTCTCTAAAAGACGAAAAGGATTGTTCAAGAAGGCGGAGGAGCTCTCTGTTCTCTGCGATGCTCAGGTTTCCATTATTATGTTTTCTGGGACCGGCAAACTCCATGAATATTTCAGCTCCACCACCACGACGAAGGAGTTACTCGATCGTTACCAGAGGGCATTAAATGTTGATCTTTGGAACTCCCATTATGAGAGAATGCAAGAGAGTCTGAGGAAGCTGAAAGAAGTCAACTGGAATCTCCGAACGCAGATAAGGCAAAGGGTCGGCCAATGTCTCGACGATCTGAACTTCGAAGAACTGCTTCGTCTTGAACAGGATATGGAAGATGGTGTCAAGTCTATTCGGGAACGCAAGTTCAAGGTGCTGGAAACTGAGTATAATAAACACAGGAAAAAGTTCAAGAACGAGGAAGATGTACACAGAAGCATTCTCCATGAATTTGAGGTGGCAATGGAGGAAGATCCACAGTATAGAGGGGTTAAGGTCGAGGGCGGAGGAGGTTACGGCGCCATTGTTGGATTCTCAAACGGAGGTCCACATTTATTTGCACTCCGGCTGCAACACACCCAGCTTCATCCCGCCGGAGCCGGATCGGATGGGAGAACTTATCCCTTGCTTGAGTAG | 687 | 48.33 | MARGKIQIERIENPTTRQVTFSKRRKGLFKKAEELSVLCDAQVSIIMFSGTGKLHEYFSSTTTTKELLDRYQRALNVDLWNSHYERMQESLRKLKEVNWNLRTQIRQRVGQCLDDLNFEELLRLEQDMEDGVKSIRERKFKVLETEYNKHRKKFKNEEDVHRSILHEFEVAMEEDPQYRGVKVEGGGGYGAIVGFSNGGPHLFALRLQHTQLHPAGAGSDGRTYPLLE | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32066294 | 32067532 | - | Bda002513.1 | Bda01g00508 | 508 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g00508 | 228 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | Coils | Coil | 84 | 104 | - | - | |
Bda01g00508 | 228 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 225 | - | - | |
Bda01g00508 | 228 | SUPERFAMILY | SRF-like | 3 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Bda01g00508 | 228 | ProSiteProfiles | K-box domain profile. | 84 | 174 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda01g00508 | 228 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | Pfam | K-box region | 81 | 167 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda01g00508 | 228 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00508 | 228 | PANTHER | APETALA3 | 1 | 225 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g00508 | Bda03g00275 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00508 | Bda-Chr1:32066294 | Bda04g00032 | Bda-Chr4:528368 | 3.28E-63 | dispersed | |
Bda15g00490 | Bda-Chr15:8043975 | Bda01g00508 | Bda-Chr1:32066294 | 2.81E-26 | dispersed | |
Bda01g00508 | Bda-Chr1:32066294 | Bda03g00275 | Bda-Chr3:2412161 | 6.31E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15355 | PF01486 | K-box | 1.40E-16 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g00508 | K09264 | - | csin:114263054 | 275.404 |