Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00515 ATGATGGATACGTATTTTCCGAGCATAAACAATCAAAGAAATGATGTAATAACTCCATATATGGAAGACCGGAAAATCAATTCTTATTCAGAGATGCCTTTCTGCTCTAATAGTATGGTGATGGGCCTGAATCAAGGTCCTGCTCATGGATTTTACTCGAGCACTTCCAACTGTGTGGATGGTATAGAAGGCAGATATGAGATGGCCTTTCTTCCACAATTTGGACATTCATTAGGCATCCAAGACTTTGCTTCAGAGCTAGAATCTGAAAAAATTGATCAGCTTGGAATTCCAAATGGCGGAAAGAATAGTCAGTGTGGGGGATTATCGCTCAGTCTTGGCTCAAAGATATCGTTTTCTGCTGGAAATCGAAGTGCTGCAGAAATGGAGACTTTTCCAAATTCTTCTGGCTTGGCCGCCCTCAGCAGAATGAACTCCAATGTTTATGATCCATATGAAGCTTCGGTTCTGGCTAACACTGGCTTAAACTCGAAATATGTCAAGGCAGCTCAACAATTGCTTGATGAAGCGGTGAATATAAGAGCGGCTTTGAATGGGATCAGATCTAATAAATATAAAAGCTTCGTTAATAGCTCGAACAATAACAATGGCGGATCTAGTGGTCGATCTTTGGATGTGTCTTCTAGTTATGGCGCATCGACGACCAACCCCTCTCGTGAACTCTCATCTGTAGAGCGGCAGGACTTGAAGAACAGAAGTGCTAAGCTTTTGTCCATGGTTGAAGAGGTCGATGAAAGATATAGGCAATACTATCAACAGATGCAAATAATGGTGTCATCTTTTGATATGATAGCTGGTTGTGGGGCTGCAGAATTATATACAGCACTAGCTCATCAAACCATTTCACGCCATTTTCGACGTTTACGAGACGGAATCAGTGATCAGATTCAGGTAATGAGGAGAAATTTGGGAGAGGAAGATTGTTCATCAGCTGGTCAGAGGGGAATTCCTCGACTACGCTATGTTGATCAGCAGCTCAGACAACACAGAGCTCTTCAACAACTTGGTCTCACCCGACATTCTTGGAGGCCTCAAAGGGGGCTTCCAGAGAGCTCTGTCTCGATCCTTCGTGCTTGGCTGTTCGAACATTTCCTTCATCCCTATCCGAAAGATACTGAGAAACTCATGCTCGCAAGGCAGACTGGATTGACACGAAATCAGGTCGCAAACTGGTTCATAAATGCGCGTGTGCGCCTTTGGAAGCCCATGGTGGAGGAGATGTACAAAGAGGAGTTTGGTGATCCGACAATGGACTTCAACTTTTCACCAGAAAACACTTCCGGAGCTCCCAAAAATTGTTCGTTCCCGTTCGAAGACCAGGACGAAGATTTGCAGGGGAGTGTAATATCATCGAATGCCGATGGCGAGCAAATTCAAGAGTTGAATTCAAATGAAATCTCTGGTATGGAAATGAAGGAAAACGCAAGAAAAATAGGAGTTGAAAGCCTCGGAAATGCAGAGAATATTGCCAATCACCCTCTTTATCCGCACAATATGATCTTATCGAACCGAGTCTCGCTTGCGTTGGAGCTGAGGCATTGCGAAAAAAACGACTGCCTTTTGAAATCGGACGTTGTTCGTAATGCAGAAGATGCTCCAATGGGTAAATGCAGGTTAGGAAGTCCCCAACTTCTTCATGATTTTGTTGTATGCAAGAGTGATTGCCTTTAG 1692 43.74 MMDTYFPSINNQRNDVITPYMEDRKINSYSEMPFCSNSMVMGLNQGPAHGFYSSTSNCVDGIEGRYEMAFLPQFGHSLGIQDFASELESEKIDQLGIPNGGKNSQCGGLSLSLGSKISFSAGNRSAAEMETFPNSSGLAALSRMNSNVYDPYEASVLANTGLNSKYVKAAQQLLDEAVNIRAALNGIRSNKYKSFVNSSNNNNGGSSGRSLDVSSSYGASTTNPSRELSSVERQDLKNRSAKLLSMVEEVDERYRQYYQQMQIMVSSFDMIAGCGAAELYTALAHQTISRHFRRLRDGISDQIQVMRRNLGEEDCSSAGQRGIPRLRYVDQQLRQHRALQQLGLTRHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDTEKLMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDPTMDFNFSPENTSGAPKNCSFPFEDQDEDLQGSVISSNADGEQIQELNSNEISGMEMKENARKIGVESLGNAENIANHPLYPHNMILSNRVSLALELRHCEKNDCLLKSDVVRNAEDAPMGKCRLGSPQLLHDFVVCKSDCL 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32123874 32126210 + Bda002521.1 Bda01g00515 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00515 563 Gene3D - 345 422 - -
Bda01g00515 563 CDD homeodomain 349 410 IPR001356 GO:0003677
Bda01g00515 563 MobiDBLite consensus disorder prediction 198 234 - -
Bda01g00515 563 MobiDBLite consensus disorder prediction 198 229 - -
Bda01g00515 563 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Bda01g00515 563 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Bda01g00515 563 Pfam Associated with HOX 163 300 IPR006563 -
Bda01g00515 563 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 114 532 - -
Bda01g00515 563 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 532 - -
Bda01g00515 563 SMART HOX_1 349 413 IPR001356 GO:0003677
Bda01g00515 563 SMART prehox3 155 301 IPR006563 -
Bda01g00515 563 Coils Coil 233 253 - -
Bda01g00515 563 SUPERFAMILY Homeodomain-like 350 417 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00423 Bda-Chr1:30787966 Bda01g00515 Bda-Chr1:32123874 1.34E-89 dispersed
Bda01g00515 Bda-Chr1:32123874 Bda03g00660 Bda-Chr3:5622800 5.59E-89 dispersed
Bda09g00034 Bda-Chr9:536688 Bda01g00515 Bda-Chr1:32123874 1.12E-73 dispersed
Bda01g00515 Bda-Chr1:32123874 Bda01g01513 Bda-Chr1:50968677 4.01E-72 wgd
Bda01g00515 Bda-Chr1:32123874 Bda03g00272 Bda-Chr3:2397758 0 wgd
Bda01g00515 Bda-Chr1:32123874 Bda08g01259 Bda-Chr8:51315713 2.68E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15359 PF07526 POX 2.70E-44 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00515 - - qlo:115974406 457.988