Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00519 ATGGAAGCTGGAGGTGTTCTTCATATGAATACAGGGAATGGAGTTACCAGCTATGCTCAGAACTCCACAGTTCAGAATCGGATCATATCGATTGCAAAACCAGTGACGATGAAAGCCATTGAAGAACTGTTGGCAGGATCGTTGCCGGAGAGCATGGGGATAGCCGACTTGGGCTGCTCGTCGGGACCAAACACTTTAAACGTAGTTTCGGAGATAATGGACGTCGTGTACGATAAATACAGAGGCAATGGCCGGGCTTTGCCGGAGCTTAGTGTGTTTCTTAATGATCTTTATGAAAATGATTTCAACTACGTTTTTGGAATGTTACCAACTTTCCGCCATAGGATTACGAAGGAGAAAGGCGTTGAGTTTGCCCAGAAATGCTCCATTTTCGGCGCCCCTGGTTCTTTTTATGGTAGACTGTTTCCCAGCAAGAGCCTCCATTTTGTTCACTCCTCTTCCAGTCTCCATTGGCTATCTCAGGAAGTTTTTTTAGTAAAGTTTTTGAAAATAGTTAGAAAATACACTGAAAATATAAAATCGATTCAGGCGCCGCCATGTTTGTGGAAAGAAGAAGGAAAGGAAGCGATGAACAAGGGGAAGATATACATATCAAAGAAGAGTCCTCCATGCGTGCTGGAAGCTTACGCAGACCAGTTTCATCAAGATTTTTCTGCGTTTCTAAAATCACGTTCAGAAGAAATGGTGAAGGGAGGAGGAATGGTGCTGTCCTTCATTGGGAGACGATCTATGGATCCCACCTCTGACGAGAGTTATCTCCACTGGGAGTTCTTAGGGCAAGCCTTGATGAGCATGGTTTCCCAGGGACTGATTAAAGAAGAAAAAGTTGACTCTTTCAACGCTCCCTACTATGCTCCATGCATAGAACAAATACAAATGGAGGTAGAGAAAGAAGGTTCATTCACCGTGGATCGCGAGGAGTCTTTCCAAATCGATTGGGATGGAGGAAGTAACAAAGAAATCGTAAGCGATTTTGCAGCTCAATCGAGCGGAAAACGAGTGGCGAAGACGATACGAGCTGTGGTAGAATCCATGTTCGAGTCTCATTTTGGAGGAGAAATTATCAACGAGTTATTCGTAAGATTCGAGAAAATCGTGGATGATCAATTTTCAAAGACAAGAGCCAAGTACATTAACTTGGTTATTTCTCTAGTGAGAAAATAA 1185 43.29 MEAGGVLHMNTGNGVTSYAQNSTVQNRIISIAKPVTMKAIEELLAGSLPESMGIADLGCSSGPNTLNVVSEIMDVVYDKYRGNGRALPELSVFLNDLYENDFNYVFGMLPTFRHRITKEKGVEFAQKCSIFGAPGSFYGRLFPSKSLHFVHSSSSLHWLSQEVFLVKFLKIVRKYTENIKSIQAPPCLWKEEGKEAMNKGKIYISKKSPPCVLEAYADQFHQDFSAFLKSRSEEMVKGGGMVLSFIGRRSMDPTSDESYLHWEFLGQALMSMVSQGLIKEEKVDSFNAPYYAPCIEQIQMEVEKEGSFTVDREESFQIDWDGGSNKEIVSDFAAQSSGKRVAKTIRAVVESMFESHFGGEIINELFVRFEKIVDDQFSKTRAKYINLVISLVRK 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32153947 32155688 + Bda002526.1 Bda01g00519 519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00519 394 Pfam SAM dependent carboxyl methyltransferase 39 393 IPR005299 GO:0008168
Bda01g00519 394 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 394 IPR029063 -
Bda01g00519 394 Gene3D Vaccinia Virus protein VP39 21 319 IPR029063 -
Bda01g00519 394 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 182 392 IPR005299 GO:0008168
Bda01g00519 394 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 182 392 - -
Bda01g00519 394 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 6 161 - -
Bda01g00519 394 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 161 IPR005299 GO:0008168
Bda01g00519 394 Gene3D - 6 380 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00519 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - rcu:8275761 439.113
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00519 Bda-Chr1:32153947 Bda04g00238 Bda-Chr4:17736587 1.27E-104 dispersed
Bda15g00505 Bda-Chr15:8137806 Bda01g00519 Bda-Chr1:32153947 3.43E-29 dispersed
Bda01g00519 Bda-Chr1:32153947 Bda14g00999 Bda-Chr14:8384469 1.32E-101 wgd
Bda01g00519 Bda-Chr1:32153947 Bda14g00559 Bda-Chr14:4112844 2.14E-83 wgd
Bda01g00519 Bda-Chr1:32153947 Bda03g00269 Bda-Chr3:2361007 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g983 . . Bda01g00519 . Bpe02g00376 . . Bma01g02336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01988 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00519 Bda_Chr01 FPKM 13.894737 14.3473 19.3188 21.427288 17.463949 15.578242 18.171864 12.38853 12.096885