Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g00525 | ATGCCATTCAAAAGTGTAGTTCGTGAAATAAGAGAGAGTATTGGAAACCTAAGAAGAAAAGGGGAAGAAGGAAGACCTTTACGCCATCCAGGAAAATCACATATAGCACCGGAGCAGCCTCCCTGTTCATCATCGCCTTCTTTGATTCCACAGAGCCGATGGGCGAGTTTGCCTACCGAGTTGATTCTGGACATAATTCAAAGAGTCGAATCAAGCGAAACCTCCTGGCCTGGCCGGAGAGATGTTGTTGCTTGTGCTTCCGTTTGTAAATCATGGAGGGAGATTGCTTTAGGAGTTGTTAAAACGCCCGAGAAGTGTGGCTTGCTGACCTTTCCTATCTCCCTCAAACAGCCGGGACCAAGAGAGACGCCAATCCAGTGCTTTATAAGGAGGGACAGATCAACCTCTACATATCGACTCTATCTCGGTCTAAGTCCGGCCCTGTCCGGCAACATGAGCAAGTTGTTACTAGCCGGAAGGAAAGTCCGACGGGCAACCCATACCGATTTCATAATATCCTTAGTCGCCGATGATTTCTCCCGAGCAAGCAACACTTATATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAATACACGATAGTCAACCTCCACTGGATCCGACTATGCAAACAACTTCTAGTTCGCAACGAAGAGGCCATTTAAAGCGGGTTTCACCGAGAGTATCCATTGGAGACTATAATGTTTCCTCCATATCTTACGAGCTCAATGTCCTTCGAACCAGAGGTCCGAGGAGAATGCAGTGCACCATGAATTCAATACCAGTTTCATCCATTCAAGAAGGCGGCACAGCCCCTACTCCAACCGAATTTATCAAATGTCTGGATGAGAAACAAGATCCTCCACTGACAGTAGCCAAGAAAAAGAAGCGTCAAGTCGAGATTAGTTTCAGTAGTCTATCCGAGCCTCTCATCCCAGTTCATTCTCCACTCGTTCTGAAAAATAAAGCTCCGAGATGGCACGAGCAGCTCCAGTGTTGGTGCCTAAACTTCAGAGGACGGGTAACAGTTGCTTCCGTAAAAAATTTCCAGCTCGTGGCATCTGCTGATGATGTTCGCCAAAATATTTCTGCTGCTGAGCAGGAGAAAGTGATTCTTCAATTTGGTAAAATCGGGAAAAACATATTCACCATGGATTATCGATATCCTCTATCCACATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCTGCCTGTGAATGA | 1242 | 45.81 | MPFKSVVREIRESIGNLRRKGEEGRPLRHPGKSHIAPEQPPCSSSPSLIPQSRWASLPTELILDIIQRVESSETSWPGRRDVVACASVCKSWREIALGVVKTPEKCGLLTFPISLKQPGPRETPIQCFIRRDRSTSTYRLYLGLSPALSGNMSKLLLAGRKVRRATHTDFIISLVADDFSRASNTYIGKLRSNFMGTKFSIHDSQPPLDPTMQTTSSSQRRGHLKRVSPRVSIGDYNVSSISYELNVLRTRGPRRMQCTMNSIPVSSIQEGGTAPTPTEFIKCLDEKQDPPLTVAKKKKRQVEISFSSLSEPLIPVHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADDVRQNISAAEQEKVILQFGKIGKNIFTMDYRYPLSTFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32229193 | 32230771 | + | Bda002535.2 | Bda01g00525 | 525 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g00525 | 413 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Bda01g00525 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Bda01g00525 | 413 | PRINTS | Tubby superfamily signature | 322 | 339 | IPR000007 | - | |
Bda01g00525 | 413 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Bda01g00525 | 413 | PRINTS | Tubby superfamily signature | 340 | 356 | IPR000007 | - | |
Bda01g00525 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Bda01g00525 | 413 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Bda01g00525 | 413 | MobiDBLite | consensus disorder prediction | 201 | 222 | - | - | |
Bda01g00525 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Bda01g00525 | 413 | PANTHER | TUBBY-RELATED | 1 | 413 | - | - | |
Bda01g00525 | 413 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 413 | - | - | |
Bda01g00525 | 413 | Gene3D | Tubby Protein; Chain A | 113 | 413 | IPR025659 | - | |
Bda01g00525 | 413 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Bda01g00525 | 413 | Pfam | Tub family | 115 | 408 | IPR000007 | - | |
Bda01g00525 | 413 | Gene3D | - | 49 | 98 | - | - | |
Bda01g00525 | 413 | MobiDBLite | consensus disorder prediction | 201 | 226 | - | - | |
Bda01g00525 | 413 | Pfam | F-box domain | 54 | 99 | IPR001810 | GO:0005515 | |
Bda01g00525 | 413 | ProSitePatterns | Tub family signature 1. | 340 | 353 | IPR018066 | - | |
Bda01g00525 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 413 | IPR025659 | - | |
Bda01g00525 | 413 | MobiDBLite | consensus disorder prediction | 17 | 47 | - | - | |
Bda01g00525 | 413 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g00525 | Bda03g00263 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00525 | Bda-Chr1:32229193 | Bda08g00735 | Bda-Chr8:8827647 | 3.22E-156 | dispersed | |
Bda01g00462 | Bda-Chr1:31717422 | Bda01g00525 | Bda-Chr1:32229193 | 0 | transposed | |
Bda01g00525 | Bda-Chr1:32229193 | Bda11g01863 | Bda-Chr11:53727722 | 0 | wgd | |
Bda01g00525 | Bda-Chr1:32229193 | Bda03g00263 | Bda-Chr3:2336476 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15360 | PF01167 | Tub | 3.20E-104 | CL0395 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g00525 | K19600 | - | zju:107420271 | 616.305 |