Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00530 ATGGCGGGAGATGTGCAATGCTGTGAAACGGAATTCTTTCTGTACATAGTTGCGATTATTGGGTTGGTTGTTTTCGCCGGATTAATGGCCGGACTTACTTTGGGTCTAATGTCTTTGGGTCTCGTCGACCTTGAGGTTCTGATCAAGTCCGGCCGACTTCAAGATCGGCTCTACGCTGCAAAAATATTCCCTGTGGTGAAGAACCAGCATCTTCTTCTTTGCACACTTTTGATCGGAAACTCGTTAGCAATGGAGACTCTTCCGATATTCTTGGATAAGATCGTGCCTCCATGGGCAGCAATTCTCTTATCAGTCACATTAATCCTCATGTTTGGAGAGATATTGCCTCAAGCCATTTGTACTCGATACGGATTGAAAGTCGGAGCGATTATGGCTCCGTTTGTTCGTGTTCTTCTCATGCTTTTCTTCCCCATTTCCTATCCCATCAGTAAGATTCAATCTCTGATATCTGATACAATATTAATTTCAATATCGCTCGATATGTATCGTTTTGGCTCTATTTGTTTGGTTCCAATGCAGGTTTTAGACTATATGCTGGGAAAGGGCCACACTGTTCTTTTAAGACGAGCAGAGCTCAAGACTTTCGTGCATTTTCACGGCAACGAGGCTGGAAAAGGTGGAGATTTAACACACGATGAGACGACCATCATAGCCGGTGCCCTCGAATTGACTGAAAAAACAGCAATTGATGCCATGACTCCAATATCAAATGCATATTCCCTCGACCTCGACGCAATTCTTGATTTGAAAACACTGAATACAATCATGTCCAAGGGTCATAGTAGAGTTCCTGTTTATTCGGGCAGGCCTACGAACATCATCGGACTTGTTCTGGTTAAAAATCTACTGTCAGTTGACCCTGCAGATGCTCTAATCCTCAGAAAAATGATTATAAGAAAGATTCCTCGAGTGTCTGAAGACATGCCTCTGTATGATATTCTAAACGAATTCCAGAAAGGGCACAGTCATATTGCTGTTGTGTTTAAGGATCTGAATGAGAAGAAGAGCAAAGCACAACAAGAGCATAATTCGAAGAACAGTCATGGTGTTGGCACGGAGGCAGTACAGGATGCTAATTCGGCTTCTTCGAGTGTGAAAGGAGATCATCCAATGAAGAAATCTCTACCCGCCGCCGCGTCTCTTAGAAAACGACACAGAGGATCCTCATTTTGCATTTTGGATATCGAAAATGCTCCGATTCCTGAGTTCCCGGCTAATGAAGAGGTTGTCGGTGTCATAACCATGGAAGATGTTATAGAAGAGCTCCTTCAGGAGGAGATCTTAGATGAAACTGATGAGTATGTGAACATCCACAACAGGTATAGTTGA 1350 43.26 MAGDVQCCETEFFLYIVAIIGLVVFAGLMAGLTLGLMSLGLVDLEVLIKSGRLQDRLYAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDKIVPPWAAILLSVTLILMFGEILPQAICTRYGLKVGAIMAPFVRVLLMLFFPISYPISKIQSLISDTILISISLDMYRFGSICLVPMQVLDYMLGKGHTVLLRRAELKTFVHFHGNEAGKGGDLTHDETTIIAGALELTEKTAIDAMTPISNAYSLDLDAILDLKTLNTIMSKGHSRVPVYSGRPTNIIGLVLVKNLLSVDPADALILRKMIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVFKDLNEKKSKAQQEHNSKNSHGVGTEAVQDANSASSSVKGDHPMKKSLPAAASLRKRHRGSSFCILDIENAPIPEFPANEEVVGVITMEDVIEELLQEEILDETDEYVNIHNRYS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32276691 32279093 + Bda002541.1 Bda01g00530 530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00530 449 CDD CBS_pair_CorC_HlyC_assoc 234 334 IPR044751 -
Bda01g00530 449 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 11 447 IPR045095 GO:0010960
Bda01g00530 449 MobiDBLite consensus disorder prediction 350 374 - -
Bda01g00530 449 Gene3D - 218 360 IPR046342 -
Bda01g00530 449 SUPERFAMILY CBS-domain pair 223 431 IPR046342 -
Bda01g00530 449 ProSiteProfiles CNNM transmembrane domain profile. 8 220 IPR002550 -
Bda01g00530 449 MobiDBLite consensus disorder prediction 342 379 - -
Bda01g00530 449 Pfam Cyclin M transmembrane N-terminal domain 18 157 IPR002550 -
Bda01g00530 449 Gene3D - 361 437 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00530 K16302 CNNM; metal transporter CNNM - pvy:116119414 597.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00530 Bda03g00259 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00530 Bda-Chr1:32276691 Bda15g00473 Bda-Chr15:7908185 2.13E-167 dispersed
Bda01g00530 Bda-Chr1:32276691 Bda03g00259 Bda-Chr3:2312733 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g942 . Blo12g00909 Bda01g00530 Bda03g00259 Bpe02g00392 Bpe04g00212 Bma04g00208 Bma01g02320 . . Cma01g01908 . Car01g01490 . . . . . . . . . . . . . . . . . . . . Cone17ag1339 . Lsi04g01664 Csa03g04207 Chy04g00511 . . . . . . . . . . Cmo01g01971 . . . . . . Cpe02g00128 . . . . . . . Cla05g01942 Cam05g2085 Cec05g2098 Cco05g2152 Clacu05g2080 Cmu05g1955 Cre05g2075 . . . Cme04g00566
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009053 2 3 1 2 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00530 Bda_Chr01 FPKM 2.084066 1.455034 0.0 0.0 1.576989 1.29614 1.194144 0.151781 0.588808