Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00534 ATCTCTTCTAGCGAATACGATGGAATATTGTTGGACTACTCACGGCAGTGTGCTAACCTTGAAACGGTCGGAAAACTCTTCAACTTGGCAGAGGTAGTTGCAGGTCATTTAGTTTTCTGGGACATGGTAACTGTTAATTCTAGCGCTAATGGTTGTTTTCTCTATGTTCAGGCAGCAAACCTGAAGGAAAAAATTAATCGCATGCACAGTGGGCAGCATATAAACAGCACAGAAAATAGGCCAGTGCTGCATGTTGCTCTTCGTGCTCCAAGGGATGCAGTTATAGAGAGTGATGGGAAAAATGTGGTCCCAGATGTTTGGAATGTATTAGACAAGATTCAGGAATTCTCAGATAAGATTCGCACTGGTTCTTGGGTAGGATCCACAGGGAAAGCGCTCAAGGATGTGATAGCTATTGGTATTGGCGGGAGCTTCTTGGGCCCTTTGTTTGTCCACACTGCTCTCCAAACAGATCCAGAGGCTATTGAAAGTGCAAGAGGGCGCCAACTGCGTTTTCTTGCAAATGTTGATCCCACAGACGTGGCAAGAAATATCACTGGGTTAAACCCGGAGACTACTCTTGTCGTTGTGGTTTCAAAGACTTTTACCACAGCGGAAACAATGCTGAATGCTAGGACACTTAGAGAATGGATAATTGACTCTCTTGGGCCTTCCGCTGTTGCGAAGCATATGGTAGCTGTTAGCACTAACCTTACGCTTGTCGAAAAGTTTGGTATTGATCCAAACAATGCTTTTGCATTCTGGGACTGGGTTGGTGGACGATATAGTGTTTGCAGCGCTGTAGGAGTATTGCCTTTATCAATCCAATATGGTTTTTCAGTTGTTGAAAAGTTTTTGAAGGGGTCTTCAAGCATTGATCAACATTTCTTTTCAACCCCGTTTGAGAAAAATCTTCCAACATTGCTCAATTATGTCATGTTTTTCTCAGGTGCTTTTGGGATTGTTGAGTGTATGGAATGTTTCCTTTCTTGGGCATCCTGCAAGAGTGAGACCACTCATTTATTCTCTCACATTATCCGGCTTCAACATGTTAGCATGGAGAGTAATGGTAAGGGGGTATCTATTGATGGAGTGCCACTGCCTTTTGAGGCTGGTGAAATTGATTTTGGTGAACCAGGCACCAATGGTCAACACAGCTTTTACCAGCTAATTCATCAGGGTCGTGTTATTCCCTGTGATTTCATTGGTGTTGTGAAGAGTCAACAACCTGTGTACTTGAAAGGCGAAGTAGTGAGTAATCATGATGAACTTATGTCTAATTTTTTTGCACAGCCGGATGCTCTTGCCTATGGAAAGACTCCCGAACAGTTGCACAATGAAAATGTGCCTGAACATCTTATTTCTCACAAGACCTTCTCTGGCAATCGTCCTTCTTTCAGCATTCTGCTTCCTTCGTTGAGTGCCTATAATATTGGTCAGTTACTAGCGATCTATGAGCACAGAATCGCTGTGGAAGGTTTCATATGGGGAATCAATTCTTTTGATCAATGGGGAGTGGAACTGGGGAAGTCACTTGCTAGTAATGTTCGTAAGCAACTTCACGCTTCAAGAACTGAAGGAGAACCAGTTGAGGGCTTTAATTTCAGTACAACTATGTTGTTAAACAGATATTTAGAGGTAACTCTCTCTCGCTCTGGGTGTGGGGAGTGGTTTGAAACTTATCAGAAGGTTGTATAG 1698 43.05 ISSSEYDGILLDYSRQCANLETVGKLFNLAEVVAGHLVFWDMVTVNSSANGCFLYVQAANLKEKINRMHSGQHINSTENRPVLHVALRAPRDAVIESDGKNVVPDVWNVLDKIQEFSDKIRTGSWVGSTGKALKDVIAIGIGGSFLGPLFVHTALQTDPEAIESARGRQLRFLANVDPTDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWIIDSLGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSIQYGFSVVEKFLKGSSSIDQHFFSTPFEKNLPTLLNYVMFFSGAFGIVECMECFLSWASCKSETTHLFSHIIRLQHVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAYGKTPEQLHNENVPEHLISHKTFSGNRPSFSILLPSLSAYNIGQLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLASNVRKQLHASRTEGEPVEGFNFSTTMLLNRYLEVTLSRSGCGEWFETYQKVV 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32293046 32303139 + Bda002545.1 Bda01g00534 534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00534 565 SUPERFAMILY SIS domain 55 546 IPR046348 GO:0097367|GO:1901135
Bda01g00534 565 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 1 547 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 ProSitePatterns Phosphoglucose isomerase signature 2. 493 510 IPR018189 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 Gene3D - 55 502 - -
Bda01g00534 565 Hamap Glucose-6-phosphate isomerase [pgi]. 6 520 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 56 547 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 Pfam Phosphoglucose isomerase 56 540 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 56 547 - -
Bda01g00534 565 ProSitePatterns Phosphoglucose isomerase signature 1. 256 269 IPR018189 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 PRINTS Glucose-6-phosphate isomerase signature 479 493 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 PRINTS Glucose-6-phosphate isomerase signature 136 155 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 PRINTS Glucose-6-phosphate isomerase signature 461 479 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 PRINTS Glucose-6-phosphate isomerase signature 493 506 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 PRINTS Glucose-6-phosphate isomerase signature 252 270 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda01g00534 565 Gene3D - 503 547 IPR023096 GO:0004347|GO:0006096
Bda01g00534 565 CDD SIS_PGI_1 107 275 IPR035476 -
Bda01g00534 565 CDD SIS_PGI_2 348 516 IPR035482 -
Bda01g00534 565 Gene3D - 84 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00534 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101217944 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00534 Bda-Chr1:32293046 Bda13g00729 Bda-Chr13:8788078 7.19E-112 dispersed
Bda01g00534 Bda-Chr1:32293046 Bda03g00461 Bda-Chr3:3984819 1.21E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00534 Bda_Chr01 FPKM 1.319496 1.109879 5.788652 5.590221 0.982368 0.700132 1.214693 89.652664 92.671883