Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00540 AATTTGAGAATGCAGTTTCTTCTTCTGCTGCTTTATCTTCTCACAATCATAATCCTCTTCAAATTTGGCTACTCAACCCTATGGCTCCCTCTCAGGATACATACCCACTTCCGGAAACAAGGCATAAGAGGCCCTCCCTTCCGTCCATTTTTGGGCAACGCCCTCGAGCTCCGCCTTTCCTTCGACGAAGCTCTGGCGAAGACTATTCCTTTTAACCACGACGTAAAACGTTTCTTGCACTGGTTTGGGTCCGTTCCCCGACTGGCACTGACCGACCCGGATTCGATCAAGGAGATTTTCATGAACACCGGCAAATCGTTTCTGAAGGCGAAAAGCCTATTCTCTGATGGGATTAGTCAGCTTGAAGGTGATAAATGGGTCTTACATAGAAGAATCGTGACCCAGGCCTTCACGTTATATCGCGTAAAGGGATGGGTGCCTGAATTCGTTGCCAGTGCTACAACAATGGCGGAAAAATGGGAAGCATTGAATGAAGGGAGGGATGAGTTTGAAATAGAGGTTCACAGAGAATTCCACAATCTATCAGCAGATATAATATCAAGAACAGCCTTCGGGAGTAGCTTTGAAGAAGGCAAACACATCTTCGATCTGCAAGAGCAGCAGATGCAGCTCTTCGTGATTGCTGTTCAAAGAGTTTACATTCCTGGATTTAGGTACGTTCTTCCTTTTCTTTCAAGTTTCGAGTATGTCTGGTTTGATAACTTTGTTGTCTTTGGTCAAAAAACCAGATTTCTGCCTACCCAGATGAACAGAAAGAGGTGGAGATTAGAGAGAGAAGTGCGGAAATCGATAAGAAGACTTATCGAAATGAGCGACCAGACGAGTGGGAATTCAACAAATCTGCTTAGTTTGTTGACATCTTCGTATAGAAATCAGAACGGGGAAGAAGAGAGGCTGACGATGGATGAGATTATAGACGAATGCAAGTCATTTTACATCGCCGGAAAGGAAACAACTGCTATTCTTCTGACTTGGCTTTTCCTTCTTTTAGCGCTTCATCAGGATTGGCAAAGCAAGGCAAGAGAAGAAGTCCGTCGTGTTTGTGGCGATAAACGGCCTCCGACGGCGGATGACTTGAGTTCTCTTGAGATTGTGACGATGATAATCAACGAAACACTTCGGCTCTACCCACCGGCAGTGTTACTGACGTGGTATGCAAGAACAGACCTTAAGTTAGGAAGGATTGACATTCCGGCGAATACAGAACTCGTTCTGGCCTTGACGGCTACCCATCATGATCCCGACGTTTGGGGCGAAGATGCTCAGGAATTCAACCCTCTGAGGTTTGAAGAGCCTCGGAAACATCTGGGCATGTTCCTGCCATTTGGACTCGGGCCAAGAATCTGTGTTGGTCAGACAATGGCCATGGCCGAAGCGAAGGTGGTTCTGGCGACCCTTCTTCAACGATACTCTTTCACGGTGTCACCATCGTATGTCCATTCCCCGAGGTTCCTTGTAAGTCTGCAGCCTCAGTTTGGTGCTCAAATCGGTAAAATGCCACCGTCTTATTTTTCACAACTGAGAATTGCAGCTCAAAGATCACTTTTAGGACGGGAAAGAAGGATACAGGATTCTGTGGAACTGCTACAGCGGCAGCATAAATGGTTTTTTGGGAGTACCAAAGAGCTTCATTCTTCACCATCTTCAACATTGGCTGAGTTTCATGCAAGCTTACGACCTAGCACTTCTATTACTGCAAGATTGGAGCTAGATTATCGGAGGAGGAATATTTCTCTTCTTGGAGCTCTTTCTCGTACATTCTCCATTCCCTCGGTGTCAGGGCATGCCTTTCAAATCTGTGGTTATCCTATTCATTGTGCTTTTGGCGAACACAGGCGATCTTTAGTTGGAAATAAGTTTCAACTCAAAATGGCCGCTTGTGGTTCCAGGGCTTTTTTCACTGAATGTGTTATTAATAATTTAAGTTCAAATCACAAGAACTTGTCAGTGACTGAAAATAGTCCATGTATATGTTATAGTAGCATTAGTTTTGACAACTGTCTACGAGCTAGCATGCGATTGAGAAATCAAGAACAGCCTAATGATTCTGTAACTTACGGATATTTTGCTTATAATGTTTCAAAAAGATTGTGCAACTCTTACCCACAGACAGGCTTAGGAGTAAGAGATATGCATAGCGCACCATCTTTCTCCTTTTCTGGGGGAATTGCCTCTGATGTCTCATTTGATAACCCTGCTCGCGAGGAACAGATTATGAACTCCTCTGATTCATCTGAGAGGGGGATTCCATCTGGAAAAGCTTTGAAATTGGTATCAGGATCATGCTATCTTCCACATCCTGAAAAAGAGGAGACTGGGGGTGAGGACGCTCACTTCATTTGTGTTGATGAACACGCAGTAGGAGTGGCAGATGGTGTTGGTGGCTGGGCTGATCTTGGCATAGATTCAGGACAGTATTCTCGTGAACTTATGGGTAACTCAGTGATTGCTATTCAGGACGAGCCAAAGGGTTCAATAGACTCAGCTAGAGTCTTGGAAAAAGCTCACCTGAGTACTAAAGCTAAAGGTTCCTCAACTGCTTGTATAGTTGCACTCACAGATCAGGGTCTTCATGCAATTAATTTAGGGGACAGTGGTTTTATGGTGGTTAGAGATGGATGCACTGTCTTCCGATCTCCTGTGCAGCAACATGATTTTAACTTCACCTATCAGCTGGAGAGTGGGAGTGATGGCGACTTGCCTAGTTCTGGTGAGGTCTTCACTATCCCAGTGGCACCAGGGGATGTTGTTATCGCCGGAACTGATGGTTTATTCGACAATTTGTACAACAATGAGATAACAGCTGTGGTGGTTCATGCTTTGAGAGCTGGCTTGGGATGTCAGGTAACTGCTCAGAAAATAGCAGCTCTTGCCCGGCAAAGAGCTCTGGATAAAGACCGACAGACTCCATTTTCTACAGCTGCTCAAGACGCCGGGTTCCGCTACTACGGTGGGAAGCTGGATGATATTACCGTTGTCGTCTCCTACATAACGAACTCCAACGACGAATGA 3033 45.27 NLRMQFLLLLLYLLTIIILFKFGYSTLWLPLRIHTHFRKQGIRGPPFRPFLGNALELRLSFDEALAKTIPFNHDVKRFLHWFGSVPRLALTDPDSIKEIFMNTGKSFLKAKSLFSDGISQLEGDKWVLHRRIVTQAFTLYRVKGWVPEFVASATTMAEKWEALNEGRDEFEIEVHREFHNLSADIISRTAFGSSFEEGKHIFDLQEQQMQLFVIAVQRVYIPGFRYVLPFLSSFEYVWFDNFVVFGQKTRFLPTQMNRKRWRLEREVRKSIRRLIEMSDQTSGNSTNLLSLLTSSYRNQNGEEERLTMDEIIDECKSFYIAGKETTAILLTWLFLLLALHQDWQSKAREEVRRVCGDKRPPTADDLSSLEIVTMIINETLRLYPPAVLLTWYARTDLKLGRIDIPANTELVLALTATHHDPDVWGEDAQEFNPLRFEEPRKHLGMFLPFGLGPRICVGQTMAMAEAKVVLATLLQRYSFTVSPSYVHSPRFLVSLQPQFGAQIGKMPPSYFSQLRIAAQRSLLGRERRIQDSVELLQRQHKWFFGSTKELHSSPSSTLAEFHASLRPSTSITARLELDYRRRNISLLGALSRTFSIPSVSGHAFQICGYPIHCAFGEHRRSLVGNKFQLKMAACGSRAFFTECVINNLSSNHKNLSVTENSPCICYSSISFDNCLRASMRLRNQEQPNDSVTYGYFAYNVSKRLCNSYPQTGLGVRDMHSAPSFSFSGGIASDVSFDNPAREEQIMNSSDSSERGIPSGKALKLVSGSCYLPHPEKEETGGEDAHFICVDEHAVGVADGVGGWADLGIDSGQYSRELMGNSVIAIQDEPKGSIDSARVLEKAHLSTKAKGSSTACIVALTDQGLHAINLGDSGFMVVRDGCTVFRSPVQQHDFNFTYQLESGSDGDLPSSGEVFTIPVAPGDVVIAGTDGLFDNLYNNEITAVVVHALRAGLGCQVTAQKIAALARQRALDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYITNSNDE 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32352225 32359620 + Bda002552.1 Bda01g00540 540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00540 1010 Gene3D Cytochrome P450 29 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 Pfam Protein phosphatase 2C 845 939 - -
Bda01g00540 1010 Gene3D - 770 901 IPR036457 -
Bda01g00540 1010 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Bda01g00540 1010 SUPERFAMILY PP2C-like 769 1002 IPR036457 -
Bda01g00540 1010 Pfam Cytochrome P450 43 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 SMART PP2C_4 755 1002 IPR001932 -
Bda01g00540 1010 ProSiteProfiles PPM-type phosphatase domain profile. 768 1004 IPR001932 -
Bda01g00540 1010 PANTHER PROTEIN PHOSPHATASE 2C 594 1009 IPR039123 -
Bda01g00540 1010 PANTHER PROTEIN PHOSPHATASE 594 1009 - -
Bda01g00540 1010 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 SMART PP2C_SIG_2 764 1004 IPR001932 -
Bda01g00540 1010 SUPERFAMILY Cytochrome P450 44 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00540 1010 Gene3D - 906 1009 IPR036457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00540 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101205693 658.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00540 Bda-Chr1:32352225 Bda02g00461 Bda-Chr2:45385013 3.76E-127 dispersed
Bda03g00255 Bda-Chr3:2285857 Bda01g00540 Bda-Chr1:32352225 0 transposed
Bda08g00697 Bda-Chr8:7532280 Bda01g00540 Bda-Chr1:32352225 1.03E-46 transposed
Bda09g00116 Bda-Chr9:2004745 Bda01g00540 Bda-Chr1:32352225 2.94E-36 transposed
Bda09g00551 Bda-Chr9:7204516 Bda01g00540 Bda-Chr1:32352225 4.24E-62 transposed
Bda01g00540 Bda-Chr1:32352225 Bda14g01018 Bda-Chr14:8556882 1.15E-86 wgd
Bda01g00540 Bda-Chr1:32352225 Bda03g00254 Bda-Chr3:2283379 2.92E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g916 . . Bda01g00540 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01647 Csa03g04192 Chy04g00527 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00603
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00540 Bda_Chr01 FPKM 25.214922 29.354136 1.922767 1.211022 18.545826 18.775875 19.039347 0.0 0.0