Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00541 ATGGAGAAACATCCGCGAAGGGAGAGTATTCTTTTGGGTTATAGTCCTCAAATTTCTTTCGGAAATCCAGCTTCTTCTTCGCCTAGAGTCTCCGATGGGAACTCCGATATTGACTTTAACGATGTGTTCGGTGGGCCGCCGAGAAGACGCTCGTCTATTAACGATAGTCTCTACAGCTTGAACGAGAGTGCAGATTCGTTTCCAACAAAACAAGATGCCGAACCCGTCGCGAGTCGTAATCTGTTGTCGGGTTTGAGCGAAAAGCCTGTGTTTGGGGAAGAACCAGCTTATGCAAGACGACATCCAGGTGATAGTTTCTTTGACGACATTTTCAAAGGCGAGGAATCTGGTGGTTCTACTCCTAAAAGGCACGATAGGGAACCTTTTTCGCCCATGTCGAGTTCTCTGGTTTTGAGCCCGGTTAGACCTTTGCCTCCCATGGCTGAGACCTTCGAGAGTTCATCTCTGACCGCAAAATTCAGCTTACCGGCAAGAGCGGCCCGAGGGATCGACGTTTCTTCACTGGGTTCTGCTACTCACAGCACAAACAAATACACAGATGCAGGTTTTGGTGGAGCAAATCACTCGTATTCTCCTTCACTTCCTACATCTTCCACCCTATCAAGTCAAGCTCCGGAGGATGCAAAACACAATATTCAGTCGTTTTATCGGTCCAGCCTCTCCTCTCAGGAGTCGAGTCAGAACAGGGAAGAACCATCCCGGCAAGAAAAAACAGATGGAACAAACACTGGAAGTAATGTGGAGAAGGTATTCAAAAGTACTGAAGATTCGACCAGCCAAAGCCAATTTCCGTTTCATTTTTCGATATATAAGTGGGCAAATAAGGAGGTGTCTTTTACGATGCCACCAACAAGAGGGCAAGTATCGAGATTAAAACAAACTGCTAAAACCAGGAGATGCTCGAGTTCTAATGGCAGGATGGTGACTGAAAAGAATGCTAAGCAGTCTCCTACATCACCTCTGAGTAATTCTGATCGTCCCTCCGGCGATCATCCATTAGCGAGCAAGGATTCTTTCAAATTAAGACTAGAAAAAGAAGAAAGCAATTCCATTTTGGAAGAGACCAATCAACAAAGCAAAAAACGGCCTCAAATAATCGAGGAACCAATTCTCCCCAAACCCCAACCGGAGAAGACGAATAGTCTTCACAAGACTGCAGATCGTGCTCTCTTACACCACTCGAGAAGAGAAGCTAAATATGCAGGTGGTTATGGTTTGGAAGAGCAAAACCAAAACGAACAAAAACCGTCCCAAATCGTGGATGAACCAATTCTCTCCAAATCAGAATCAGAGAAGGGTAGCATTGTTCAGGAGACTGTAGATTGTGCTCCTTTGAAACATTCAAAAAGAGAAGAGAAACTGAAGAGCAATAGAAGATCACCTCTAAGTTTTGACAGTAACAAAATTTTGAAGAAAGAGGACGGAGAAGCAACTATCGTAAGAAAGCGACGGCCAAAGCTGATATGGACAACCAGCAGCCCGAGCTCTAAACAGAAACATAGAGGAAATTCAGGAGCAACCATCGAAGTTCGAGCGACTAAAACTGACCTGAAAGTGGATGAGCTTTCCAAGCAGTCTTCAAATGAACAATCCGCTTCGAAAACTGACAGCCACGGAAACAACACCGCATATTCTGAACAGAATAGCCCCGCCGAATCTATACCTGAAGACTCAAAGTTTACAGTGGTAGACATTGATGAGACCTTCCAAGAGAATTTTCTGTGGCAGATAAAAGAATTACCTCCGGATGAAATCAAACAACCGCAGATGCGAAATGATCGAGAAGAACTTAAAGCTATCGACGATAAAATACGACAATGGTCCAGAGGAAAGGAAGGGAATATACGCTCGCTTTTATCGACTCTGCAATATGTTCTTTGGCCCGAGAGCGGGTGGAAACCTGTACCGCTTGTCGACATTATCGATGGGAATGCAGTGAAAAGATCGTATCAAAGAGCTTTGCTCTGTCTACACCCGGATAAGCTTCAACAGAGGGGCGTTACTTCCCAACAAAAATACACCGCCGAAAAAGTTTTCGATATTTTGCAGGTAGCTCACTAG 2082 44.76 MEKHPRRESILLGYSPQISFGNPASSSPRVSDGNSDIDFNDVFGGPPRRRSSINDSLYSLNESADSFPTKQDAEPVASRNLLSGLSEKPVFGEEPAYARRHPGDSFFDDIFKGEESGGSTPKRHDREPFSPMSSSLVLSPVRPLPPMAETFESSSLTAKFSLPARAARGIDVSSLGSATHSTNKYTDAGFGGANHSYSPSLPTSSTLSSQAPEDAKHNIQSFYRSSLSSQESSQNREEPSRQEKTDGTNTGSNVEKVFKSTEDSTSQSQFPFHFSIYKWANKEVSFTMPPTRGQVSRLKQTAKTRRCSSSNGRMVTEKNAKQSPTSPLSNSDRPSGDHPLASKDSFKLRLEKEESNSILEETNQQSKKRPQIIEEPILPKPQPEKTNSLHKTADRALLHHSRREAKYAGGYGLEEQNQNEQKPSQIVDEPILSKSESEKGSIVQETVDCAPLKHSKREEKLKSNRRSPLSFDSNKILKKEDGEATIVRKRRPKLIWTTSSPSSKQKHRGNSGATIEVRATKTDLKVDELSKQSSNEQSASKTDSHGNNTAYSEQNSPAESIPEDSKFTVVDIDETFQENFLWQIKELPPDEIKQPQMRNDREELKAIDDKIRQWSRGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIDGNAVKRSYQRALLCLHPDKLQQRGVTSQQKYTAEKVFDILQVAH 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32360312 32363562 + Bda002553.2 Bda01g00541 541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00541 693 MobiDBLite consensus disorder prediction 52 68 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 337 358 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 225 253 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 450 474 - -
Bda01g00541 693 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 692 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 495 510 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 1 83 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 112 129 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 15 34 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 289 336 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 196 215 - -
Bda01g00541 693 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 692 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 289 399 - -
Bda01g00541 693 SUPERFAMILY Chaperone J-domain 604 693 IPR036869 -
Bda01g00541 693 MobiDBLite consensus disorder prediction 112 137 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 492 563 - -
Bda01g00541 693 MobiDBLite consensus disorder prediction 431 474 - -
Bda01g00541 693 Gene3D DnaJ domain 598 693 IPR036869 -
Bda01g00541 693 MobiDBLite consensus disorder prediction 531 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00541 - - - bhj:120091511 446.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00541 Bda-Chr1:32360312 Bda04g00391 Bda-Chr4:50933003 6.36E-34 dispersed
Bda01g00541 Bda-Chr1:32360312 Bda10g00413 Bda-Chr10:36347515 4.88E-34 transposed
Bda01g00541 Bda-Chr1:32360312 Bda11g01857 Bda-Chr11:53702338 6.21E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00541 Bda_Chr01 FPKM 16.530905 18.146681 11.115121 13.211782 11.946424 10.46544 12.319412 21.336887 18.604528