Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00547 ATGGTTGGTGGGTTTGGGGAGTCAACTAGCTGGCCATTCCAAAGCCCTTCTTTTTCTAATAACAACAGCAACAGTAACAACAATGATGCTGGCAATTTTGAGTGCAATATTTGCTTTGACTTGGCTCAAGATCCTATTGTAACCTTATGCGGCCATCTTTTCTGCTGGCCATGCCTTTACAAGTGGCTCAATATTCACTCGCATTCCCATGAATGCCCAGTTTGCAAGGCCCTCGTTGAAGAGGAGATGTTGGTTCCCTTATATGGTAGGGGAAAGACATCAACTGACCCAAGATCAAAATCAATTCCTGGCATTAATATTCCAAATCGCCCAGCTGGACAGAGACCAGAAACAGCTCCTCCTCCAGAGACAACTCACTTTCCCCAGCATGGGTTTGCACCCATGGGAGGTTTGGGTGGATTTGCACCTATGGAAACTGCAAGATTTGGTAACTTCACATTTTCTGCAGCTTTTGGTGGTCTTATCCCATCTTTGTTCAACCTTCATTTGCATGGCTTCCCCAATCCTGCGATGTATGGTCCGGCTGCTAATTTTTCTTACAGTTTTTCTAATTTGTTTCATGGAGGCGTTGCAAATAGATACGATAATCAAACACGTCAAGGGCAACAAGATTATTTTCTGAAGAGGCTACTTTTAGTTATAGGATTCTTTGTTTTTCTTGCAGTTATTTGGCAATAG 699 43.06 MVGGFGESTSWPFQSPSFSNNNSNSNNNDAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLNIHSHSHECPVCKALVEEEMLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPETAPPPETTHFPQHGFAPMGGLGGFAPMETARFGNFTFSAAFGGLIPSLFNLHLHGFPNPAMYGPAANFSYSFSNLFHGGVANRYDNQTRQGQQDYFLKRLLLVIGFFVFLAVIWQ 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32387548 32388246 + Bda002559.1 Bda01g00547 547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00547 232 MobiDBLite consensus disorder prediction 8 23 - -
Bda01g00547 232 SUPERFAMILY RING/U-box 32 88 - -
Bda01g00547 232 SMART ring_2 35 75 IPR001841 -
Bda01g00547 232 Pfam Zinc finger, C3HC4 type (RING finger) 34 75 - -
Bda01g00547 232 MobiDBLite consensus disorder prediction 90 121 - -
Bda01g00547 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 90 IPR013083 -
Bda01g00547 232 PANTHER OS12G0636000 PROTEIN 3 232 - -
Bda01g00547 232 MobiDBLite consensus disorder prediction 1 23 - -
Bda01g00547 232 CDD RING-HC_AtRMA_like 33 77 - -
Bda01g00547 232 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Bda01g00547 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bda01g00547 232 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00547 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - rcu:8260936 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00547 Bda-Chr1:32387548 Bda06g00311 Bda-Chr6:5192420 3.03E-29 dispersed
Bda10g00312 Bda-Chr10:32609875 Bda01g00547 Bda-Chr1:32387548 3.37E-101 transposed
Bda10g00322 Bda-Chr10:33200560 Bda01g00547 Bda-Chr1:32387548 1.87E-100 transposed
Bda14g01207 Bda-Chr14:12051870 Bda01g00547 Bda-Chr1:32387548 7.78E-68 transposed
Bda01g00547 Bda-Chr1:32387548 Bda03g00250 Bda-Chr3:2251464 2.30E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g886 . . Bda01g00547 . Bpe02g00406 . Bma04g00198 Bma01g02302 Cmo05g00227 . . . . . Sed11g1002 . . Bhi04g00282 Tan02g1923 Cmetu03g0100 . Hepe10g0677 . Lcy13g2012 Cla08g01518 Cam08g2009 Cec08g1585 Cco08g1720 Clacu08g1698 . Cre08g1481 Cone4ag1888 Cone7ag1799 Cone17ag1319 Cone20ag0156 . . . Cme03g01984 . . . . . . . . . . . . Cma05g00220 Car05g00180 . Cpe11g00182 . . . . . . . . . . . . . . . Lsi08g01421 Csa02g02021 Chy03g01490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00149 . 73 559 C3H Transcription Factor Family AT2G31510 74.6 3.0e-226 781.2
Bda13g01841 . 78 627 C3H Transcription Factor Family AT2G31510 64.8 4.7e-211 730.7
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31770 58.8 1.2e-167 586.6
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31760 58.5 6.3e-166 580.9
Bda13g00470 . 1 196 C3H Transcription Factor Family AT3G03550 53.0 3.8e-53 205.7
Bda01g01195 . 1 217 C3H Transcription Factor Family AT3G02290 55.9 6.7e-67 250.8
Bda12g00210 . 1 220 C3H Transcription Factor Family AT3G02290 55.3 5.7e-66 247.7
Bda07g01037 . 1 225 C3H Transcription Factor Family AT3G02290 50.9 4.2e-61 231.5
Bda02g00457 . 1 304 C3H Transcription Factor Family AT1G11020 77.2 3.8e-137 484.6
Bda05g00634 . 39 213 C3H Transcription Factor Family AT1G50440 63.4 9.7e-58 220.3
Bda10g00414 . 1 350 C3H Transcription Factor Family AT5G08750 61.9 2.8e-120 428.7
Bda07g01771 BCT 1 351 C3H Transcription Factor Family AT3G16090 75.6 3.0e-141 498.8
Bda05g00264 BCT 1 220 C3H Transcription Factor Family AT3G16090 56.9 1.3e-72 270.8
Bda01g01195 . 1 217 C3H Transcription Factor Family AT5G38895 55.7 1.8e-65 246.5
Bda12g00210 . 1 220 C3H Transcription Factor Family AT5G38895 50.7 3.3e-59 225.7
Bda01g00547 . 29 221 C3H Transcription Factor Family AT1G19310 67.5 6.5e-75 277.3
Bda10g00312 . 23 232 C3H Transcription Factor Family AT1G19310 62.6 2.1e-73 272.3
Bda10g00322 CCT 16 225 C3H Transcription Factor Family AT1G19310 62.1 8.0e-73 270.4
Bda03g00250 . 16 167 C3H Transcription Factor Family AT1G19310 60.0 2.4e-53 205.7
Bda14g01207 CCT 16 141 C3H Transcription Factor Family AT1G19310 64.7 4.9e-46 181.4
Bda07g01466 . 1 179 C3H Transcription Factor Family AT1G26800 51.6 1.5e-49 193.0
Bda10g01064 . 13 190 C3H Transcription Factor Family AT1G26800 52.7 1.9e-49 192.6
Bda04g00071 . 1 322 C3H Transcription Factor Family AT2G22120 83.6 1.1e-161 566.2
Bda09g01624 . 1 176 C3H Transcription Factor Family AT5G07040 56.8 7.9e-43 170.2
Bda06g00490 BCT 1 389 C3H Transcription Factor Family AT1G18470 74.8 1.4e-174 609.4
Bda15g00656 BCT 17 338 C3H Transcription Factor Family AT1G18470 72.0 1.0e-137 486.9
Bda01g02099 . 1 352 C3H Transcription Factor Family AT1G18470 61.6 1.7e-124 443.0
Bda11g01579 . 4 254 C3H Transcription Factor Family AT1G18470 72.5 7.8e-106 380.9
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31770 58.8 1.2e-167 586.6
Bda08g00149 . 56 517 C3H Transcription Factor Family AT2G31760 58.5 6.3e-166 580.9
Bda12g00980 CCT 15 263 C3H Transcription Factor Family AT5G55970 69.1 7.7e-98 354.0
Bda07g00422 CCT 15 262 C3H Transcription Factor Family AT5G55970 67.3 2.5e-96 349.0
Bda10g00414 . 1 350 C3H Transcription Factor Family AT5G63780 57.4 7.0e-111 397.5
Bda07g00422 CCT 17 310 C3H Transcription Factor Family AT4G26580 67.8 1.6e-117 419.5
Bda12g00980 CCT 33 322 C3H Transcription Factor Family AT4G26580 68.2 5.1e-116 414.5
Bda01g00074 . 15 502 C3H Transcription Factor Family AT5G01960 64.8 5.4e-163 570.9
Bda14g01099 . 1 258 C3H Transcription Factor Family AT5G01960 52.5 1.0e-52 204.5
Bda06g00433 BCT,CCT 1 150 C3H Transcription Factor Family AT2G04240 54.4 3.4e-41 164.9
Bda02g00620 . 3 138 C3H Transcription Factor Family AT5G19430 58.4 1.1e-41 167.2
Bda02g00620 . 1 128 C3H Transcription Factor Family AT5G12310 63.3 1.3e-42 170.2
Bda05g00947 BCT 63 220 C3H Transcription Factor Family AT5G05830 64.2 1.0e-55 213.4
Bda14g00275 . 22 208 C3H Transcription Factor Family AT5G05830 58.5 1.8e-52 202.6
Bda03g01381 BCT 60 219 C3H Transcription Factor Family AT5G05830 59.3 3.1e-52 201.8
Bda05g00277 . 60 219 C3H Transcription Factor Family AT5G05830 59.3 2.0e-51 199.1
Bda15g00243 . 80 213 C3H Transcription Factor Family AT5G05830 63.5 7.5e-46 180.6
Bda09g01136 . 23 410 C3H Transcription Factor Family AT4G28890 52.1 7.0e-94 341.3
Bda12g00210 . 1 220 C3H Transcription Factor Family AT5G15790 58.4 7.2e-69 257.3
Bda01g01195 . 1 217 C3H Transcription Factor Family AT5G15790 57.8 1.0e-67 253.4
Bda07g01037 . 1 225 C3H Transcription Factor Family AT5G15790 53.2 4.5e-63 238.0
Bda14g00139 . 1 274 C3H Transcription Factor Family AT3G55530 76.2 2.6e-110 395.2
Bda10g00600 . 1 222 C3H Transcription Factor Family AT1G63900 78.9 2.7e-99 358.6
Bda13g00448 . 12 397 C3H Transcription Factor Family AT2G44580 56.5 1.1e-122 436.8
Bda01g00547 . 30 152 C3H Transcription Factor Family AT1G74990 62.4 5.4e-40 160.6
Bda10g00312 . 30 157 C3H Transcription Factor Family AT1G74990 56.8 2.1e-39 158.7
Bda10g00322 CCT 23 150 C3H Transcription Factor Family AT1G74990 56.8 2.1e-39 158.7
Bda03g00250 . 29 147 C3H Transcription Factor Family AT1G74990 59.7 7.3e-37 150.2
Bda01g01356 . 3 336 C3H Transcription Factor Family AT5G20910 58.2 9.2e-104 373.6
Bda07g01771 BCT 119 429 C3H Transcription Factor Family AT1G65040 54.8 2.1e-79 292.7
Bda05g00264 BCT 72 236 C3H Transcription Factor Family AT1G65040 61.9 3.4e-45 179.1
Bda10g00312 . 25 233 C3H Transcription Factor Family AT2G23780 62.4 4.2e-74 274.6
Bda10g00322 CCT 18 226 C3H Transcription Factor Family AT2G23780 61.9 1.6e-73 272.7
Bda01g00547 . 31 231 C3H Transcription Factor Family AT2G23780 55.3 3.5e-60 228.4
Bda14g01207 CCT 19 139 C3H Transcription Factor Family AT2G23780 76.6 2.4e-53 205.7
Bda03g00250 . 11 159 C3H Transcription Factor Family AT2G23780 56.8 4.0e-48 188.3
Bda05g01005 BCT 1 315 C3H Transcription Factor Family AT3G10810 55.4 2.4e-82 303.1
Bda08g00140 . 1 157 C3H Transcription Factor Family AT1G63840 52.2 9.7e-44 173.3
Bda03g00991 . 1 157 C3H Transcription Factor Family AT1G63840 53.4 2.2e-43 172.2
Bda08g00511 . 1 156 C3H Transcription Factor Family AT1G63840 51.9 4.2e-39 157.9
Bda07g01752 . 17 346 C3H Transcription Factor Family AT1G68070 68.9 1.3e-127 453.0
Bda10g01198 . 4 357 C3H Transcription Factor Family AT1G68070 65.2 1.1e-126 449.9
Bda08g00529 . 40 366 C3H Transcription Factor Family AT1G68070 51.1 2.5e-86 315.8
Bda13g00332 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 3.1e-84 308.9
Bda03g00332 . 5 183 C3H Transcription Factor Family AT1G76410 53.6 1.3e-49 193.0
Bda11g00985 . 11 183 C3H Transcription Factor Family AT1G76410 54.9 3.3e-48 188.3
Bda13g01283 . 1 397 C3H Transcription Factor Family AT1G80400 54.4 2.6e-114 409.1
Bda01g00979 . 1 397 C3H Transcription Factor Family AT1G80400 53.8 1.7e-113 406.4
Bda10g00800 . 67 302 C3H Transcription Factor Family AT1G80400 60.5 7.3e-77 284.6
Bda12g00528 . 35 207 C3H Transcription Factor Family AT2G18650 55.2 2.5e-43 173.3
Bda08g00149 . 73 559 C3H Transcription Factor Family AT2G31510 74.6 3.0e-226 781.2
Bda13g01841 . 78 627 C3H Transcription Factor Family AT2G31510 64.8 4.7e-211 730.7
Bda01g00419 . 5 167 C3H Transcription Factor Family AT2G35910 58.8 2.0e-49 192.6
Bda03g01584 BCT 1 304 C3H Transcription Factor Family AT2G41980 78.0 1.5e-143 505.8
Bda05g01095 . 12 334 C3H Transcription Factor Family AT2G41980 71.9 4.7e-137 484.2
Bda05g00126 CCT,ECH 63 320 C3H Transcription Factor Family AT2G41980 81.0 2.8e-129 458.4
Bda11g00212 . 29 302 C3H Transcription Factor Family AT2G41980 75.5 2.2e-126 448.7
Bda14g00436 CCT 41 307 C3H Transcription Factor Family AT2G41980 76.0 1.2e-124 443.0
Bda15g00095 CCT 48 305 C3H Transcription Factor Family AT2G41980 77.9 2.1e-124 442.2
Bda06g00784 CCT,ECH 45 216 C3H Transcription Factor Family AT2G41980 74.6 7.4e-74 274.2
Bda01g00018 . 2 112 C3H Transcription Factor Family AT3G06140 67.0 8.3e-40 161.4
Bda05g01232 . 33 324 C3H Transcription Factor Family AT3G09770 60.1 6.8e-84 307.8
Bda05g01235 . 33 324 C3H Transcription Factor Family AT3G09770 60.1 6.8e-84 307.8
Bda03g01724 . 53 268 C3H Transcription Factor Family AT3G09770 56.6 4.1e-65 245.4
Bda01g01830 . 1 167 C3H Transcription Factor Family AT1G15100 51.5 6.8e-39 157.1
Bda07g01364 . 68 618 C3H Transcription Factor Family AT3G26730 56.2 2.3e-166 582.8
Bda15g00493 . 111 219 C3H Transcription Factor Family AT1G72220 67.3 1.4e-38 157.5
Bda03g00332 . 5 190 C3H Transcription Factor Family AT1G20823 55.4 6.1e-53 204.1
Bda11g00985 . 28 190 C3H Transcription Factor Family AT1G20823 59.6 1.2e-51 199.9
Bda14g00977 . 15 235 C3H Transcription Factor Family AT5G66070 71.5 6.8e-77 283.9
Bda04g00171 . 23 229 C3H Transcription Factor Family AT5G66070 76.9 9.2e-74 273.5
Bda11g01819 . 82 251 C3H Transcription Factor Family AT5G66070 74.7 4.0e-69 258.1
Bda06g00490 BCT 5 467 C3H Transcription Factor Family AT1G73950 70.8 1.9e-192 668.7
Bda15g00656 BCT 17 416 C3H Transcription Factor Family AT1G73950 68.0 1.4e-158 556.2
Bda01g02099 . 1 430 C3H Transcription Factor Family AT1G73950 58.3 1.4e-145 513.1
Bda11g01579 . 3 254 C3H Transcription Factor Family AT1G73950 61.6 1.3e-82 303.9
Bda10g01198 . 7 251 C3H Transcription Factor Family AT2G01735 63.4 1.2e-82 303.1
Bda07g01752 . 8 240 C3H Transcription Factor Family AT2G01735 63.3 2.3e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00547 Bda_Chr01 FPKM 0.86339 1.218681 1.168246 0.9385 5.05497 4.735068 4.771973 1.349315 1.055943