Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00547 ATGGTTGGTGGGTTTGGGGAGTCAACTAGCTGGCCATTCCAAAGCCCTTCTTTTTCTAATAACAACAGCAACAGTAACAACAATGATGCTGGCAATTTTGAGTGCAATATTTGCTTTGACTTGGCTCAAGATCCTATTGTAACCTTATGCGGCCATCTTTTCTGCTGGCCATGCCTTTACAAGTGGCTCAATATTCACTCGCATTCCCATGAATGCCCAGTTTGCAAGGCCCTCGTTGAAGAGGAGATGTTGGTTCCCTTATATGGTAGGGGAAAGACATCAACTGACCCAAGATCAAAATCAATTCCTGGCATTAATATTCCAAATCGCCCAGCTGGACAGAGACCAGAAACAGCTCCTCCTCCAGAGACAACTCACTTTCCCCAGCATGGGTTTGCACCCATGGGAGGTTTGGGTGGATTTGCACCTATGGAAACTGCAAGATTTGGTAACTTCACATTTTCTGCAGCTTTTGGTGGTCTTATCCCATCTTTGTTCAACCTTCATTTGCATGGCTTCCCCAATCCTGCGATGTATGGTCCGGCTGCTAATTTTTCTTACAGTTTTTCTAATTTGTTTCATGGAGGCGTTGCAAATAGATACGATAATCAAACACGTCAAGGGCAACAAGATTATTTTCTGAAGAGGCTACTTTTAGTTATAGGATTCTTTGTTTTTCTTGCAGTTATTTGGCAATAG 699 43.06 MVGGFGESTSWPFQSPSFSNNNSNSNNNDAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLNIHSHSHECPVCKALVEEEMLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPETAPPPETTHFPQHGFAPMGGLGGFAPMETARFGNFTFSAAFGGLIPSLFNLHLHGFPNPAMYGPAANFSYSFSNLFHGGVANRYDNQTRQGQQDYFLKRLLLVIGFFVFLAVIWQ 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32387548 32388246 + Bda002559.1 Bda01g00547 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00547 232 MobiDBLite consensus disorder prediction 8 23 - -
Bda01g00547 232 SUPERFAMILY RING/U-box 32 88 - -
Bda01g00547 232 SMART ring_2 35 75 IPR001841 -
Bda01g00547 232 Pfam Zinc finger, C3HC4 type (RING finger) 34 75 - -
Bda01g00547 232 MobiDBLite consensus disorder prediction 90 121 - -
Bda01g00547 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 90 IPR013083 -
Bda01g00547 232 PANTHER OS12G0636000 PROTEIN 3 232 - -
Bda01g00547 232 MobiDBLite consensus disorder prediction 1 23 - -
Bda01g00547 232 CDD RING-HC_AtRMA_like 33 77 - -
Bda01g00547 232 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Bda01g00547 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bda01g00547 232 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00547 Bda-Chr1:32387548 Bda06g00311 Bda-Chr6:5192420 3.03E-29 dispersed
Bda10g00312 Bda-Chr10:32609875 Bda01g00547 Bda-Chr1:32387548 3.37E-101 transposed
Bda10g00322 Bda-Chr10:33200560 Bda01g00547 Bda-Chr1:32387548 1.87E-100 transposed
Bda14g01207 Bda-Chr14:12051870 Bda01g00547 Bda-Chr1:32387548 7.78E-68 transposed
Bda01g00547 Bda-Chr1:32387548 Bda03g00250 Bda-Chr3:2251464 2.30E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00547 K10666 - rcu:8260936 365.925