Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00554 ATGTTCGCAGCGGCGAACAGTATTCCTCGCCCTAAATTCGTCAACACTATGCATTCGGATCCCAACATGTCGTCGGCGCCCATGGATGAAGATTACTCAATGAGAAAGAGCAGCGCTTCTGCCAGTGGTCAAGCCTTTTACGATGCTACCCGAATGAGTGGCGACTGCTCTCCCATGACCATGTCTCCGTGGAACCAAACTTCCATGTTTACTCAGTCGTCATGGTCGCAGTTCGAAGAAAGTGTAACGCAGAATTCTCTGATTGGCTCTCTGGTTAGGGAAGAAGGTCATATTTACTCCCTCGCTGCCTCTGGCGAGCTATTGTATACCGGTTCTGACAGCAAGAATATTCGTGTATGGAAGAATCTGAAAGAATTCACCGGGTTTAAATCAAACAGCGGCCTGGTCAAAGCAATTATAATTTCCGGCCAAAAGATTTTCACTGGCCATCAAGACGGCAAGATTCGAGTTTGGACAGCTTCCCCGAAGAATCCTGTTATTCATAAACGCTCCGGCACCCTACCTACTCTAAAAGACATTTTCAAGAGCTCCATCAATCCGAATAATTACGTCGAAGGACGACGGCAGCGGCGAGGTTTGTGGATAAAACACTCCGATGCCATATCCTGCCTGAGCTTGAGCGAAGATAAGGTGTATTTATACTCAGCTTCGTGGGATAGGACGCTGAAAGTTTGGAGAATATCGGACTCGAAATGCCTCGAGTCTATCAACGTCCACGACGACGCCGTTAACTCAGTGGTGGCAACGGGCAATGGTATGGTCTTCACAGGCTCTGCGGACGGTACGGTAAAGCTGTGGAGGAGAGAAATGAAAGGCAAAGCGACGAAACACACTTTGGCCCAAACTCTGTTGAGCCAAGACTGTGCCGTCACGGCACTGGCGGTTAACTCCTCCGGTTCGGTGGTTTACTGTGGGTCCTCCGACGGCGTGGTCAACTTTTGGGAGATAAAAAGTGAACTTTCTCACGGTGGAGTCCTCAAGGGACACAAGGTGGCTGTCCTCTGCCTCGTGGCTGCAGGGAATATGGTGTACAGCGGGTCAGCTGATAATACAATTTGTGTTTGGAGGAGGGAGGGCGCAATCCACACGTGTCTATCTGTGTTGACTGGTCACACTGGGCCCGTCAAGTGTCTGGCCGTGGAGGAGGATCAGGAGTCGTCCAAAAATGGCGATCAACGGTGGATATTATACAGTGGGAGCCTTGATAAGTCAGTGAAGGTGTGGAGTGTGTCTGAAACCACCTCTGATTCTAATCGTATGGCCATGATGCAACAGCCGTACACGGCTTCTGATGCGGACTCGCTGCCATCGGAAGGAAGCTTCTCTTCTGCGAGCAGAGCCAGCCAAAACAAGACCCACTAA 1383 50.33 MFAAANSIPRPKFVNTMHSDPNMSSAPMDEDYSMRKSSASASGQAFYDATRMSGDCSPMTMSPWNQTSMFTQSSWSQFEESVTQNSLIGSLVREEGHIYSLAASGELLYTGSDSKNIRVWKNLKEFTGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWTASPKNPVIHKRSGTLPTLKDIFKSSINPNNYVEGRRQRRGLWIKHSDAISCLSLSEDKVYLYSASWDRTLKVWRISDSKCLESINVHDDAVNSVVATGNGMVFTGSADGTVKLWRREMKGKATKHTLAQTLLSQDCAVTALAVNSSGSVVYCGSSDGVVNFWEIKSELSHGGVLKGHKVAVLCLVAAGNMVYSGSADNTICVWRREGAIHTCLSVLTGHTGPVKCLAVEEDQESSKNGDQRWILYSGSLDKSVKVWSVSETTSDSNRMAMMQQPYTASDADSLPSEGSFSSASRASQNKTH 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32472959 32474341 + Bda002568.1 Bda01g00554 554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00554 460 Pfam WD domain, G-beta repeat 370 416 IPR001680 GO:0005515
Bda01g00554 460 Pfam WD domain, G-beta repeat 293 321 IPR001680 GO:0005515
Bda01g00554 460 Pfam WD domain, G-beta repeat 331 362 IPR001680 GO:0005515
Bda01g00554 460 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Bda01g00554 460 Pfam WD domain, G-beta repeat 204 232 IPR001680 GO:0005515
Bda01g00554 460 Pfam WD domain, G-beta repeat 120 158 IPR001680 GO:0005515
Bda01g00554 460 Gene3D - 62 186 IPR015943 GO:0005515
Bda01g00554 460 PANTHER PROTEIN JINGUBANG 7 441 - -
Bda01g00554 460 SUPERFAMILY WD40 repeat-like 90 419 IPR036322 GO:0005515
Bda01g00554 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 238 - -
Bda01g00554 460 SMART WD40_4 283 322 IPR001680 GO:0005515
Bda01g00554 460 SMART WD40_4 368 416 IPR001680 GO:0005515
Bda01g00554 460 SMART WD40_4 326 363 IPR001680 GO:0005515
Bda01g00554 460 SMART WD40_4 236 274 IPR001680 GO:0005515
Bda01g00554 460 SMART WD40_4 122 159 IPR001680 GO:0005515
Bda01g00554 460 SMART WD40_4 194 233 IPR001680 GO:0005515
Bda01g00554 460 SMART WD40_4 84 121 IPR001680 GO:0005515
Bda01g00554 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Bda01g00554 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 273 - -
Bda01g00554 460 CDD WD40 95 416 - -
Bda01g00554 460 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Bda01g00554 460 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Bda01g00554 460 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Bda01g00554 460 MobiDBLite consensus disorder prediction 421 460 - -
Bda01g00554 460 Gene3D - 187 328 IPR015943 GO:0005515
Bda01g00554 460 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 441 IPR045182 -
Bda01g00554 460 Gene3D - 329 459 IPR015943 GO:0005515
Bda01g00554 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 362 IPR001680 GO:0005515
Bda01g00554 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 425 IPR001680 GO:0005515
Bda01g00554 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 325 IPR001680 GO:0005515
Bda01g00554 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 273 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00554 - - - csv:101212251 718.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00554 Bda08g01311 CCT
Bda01g00554 Bda08g01311 ECH
Bda01g00554 Bda03g00243 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00554 Bda-Chr1:32472959 Bda08g01318 Bda-Chr8:53022834 0 dispersed
Bda14g01220 Bda-Chr14:12304702 Bda01g00554 Bda-Chr1:32472959 1.41E-173 dispersed
Bda09g01302 Bda-Chr9:44868057 Bda01g00554 Bda-Chr1:32472959 3.71E-08 transposed
Bda01g00454 Bda-Chr1:31592255 Bda01g00554 Bda-Chr1:32472959 0 wgd
Bda01g00554 Bda-Chr1:32472959 Bda14g00532 Bda-Chr14:3851052 0 wgd
Bda01g00554 Bda-Chr1:32472959 Bda03g00243 Bda-Chr3:1935770 0 wgd
Bda01g00554 Bda-Chr1:32472959 Bda08g01311 Bda-Chr8:52901453 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012788 3 1 2 2 1 1 0 1 1 1 1 1 1 0 1 2 1 0 0 1 1 1 1 0 0 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00554 Bda_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.178563 0.485397 1.0008