Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00555 ATGGATTTCATCCTTTCCTTACCTAACCCTGTAACAGCTGTTGCAGTAGTCATCCTTCTCTCCTTATGGTTTTCGCGAAGACGAAGACGAGGTACTACTGAGCTGAAACCTCCACCGGAAGTTCCCGGAGGATGGCCGCTAATTGGCCATCTCCTTATGCTAGGAGGACCGGAGCCTCCCCACAGAGCTTTGGGAACCATGGCCGACAAGTGTGGCCCGATTTTCACCATCCGTCTCGGTCAGCGACCCGCGCTGATTGTGAGTAATTCAGAAATGGTGAAAGAGTGTTTTGGAGAAAACGATGCATCCATTTTCGCTCGGCCCCAGACGTTGGCTACTAAACTTTTAACCTACGACTCTGCTCTTTTTGCTTTTACAGCCAACCATCCTTTCTGGCGAGAAATGCGTAAGATTACTACGTTGGAGCTTCTCTCCAACCGCCGGCTCGAGCTGCTCAAGCATGTGAGAATTACTGAGGTAGAGACATGGATAAGTGAGATGCATGATTTTTGGATAGCCCGAAAAGGTAAAGACTCATCGGAGAAGGTTATAGTGGAGATGAAGGAATGGTTCAGTAATTTGACGTTCAACGTTATTCTGAAAGTGCTAGTCGGCAAACGCTGCTTTGGTTCAACGGAGAAGGCTGACGAGGAAGAGGCGAGGAGATTCAGACACGCGCAGGATGAGTTCTTTCGTTATTTAGGGATGTTCTTACCGGCCGATGCTATTCCTTTCCTTAAGTGGTTTGATTTTGGTGGACACCAAAAGGGAATGAAGAAGACAGCTAAAGAAATGGACAGCATTCTAGAAGGTTGGCTGGAAGAGCATAAGAGAAGAAGACTCTCCGGGGTGTCGGAAAACGATAAAGACTTCATGGACGTAATGCTTTCTACTCTGGACTACAAAAATCTCCATGGTTATGATACAGATACAATAATAAAAGCGACAATCTTGGGGGTGATCGCAGCAGCCACCGATACCTCGACGGTGACCCTAACTTGGGCGACGTCGTTATTGCTGAATAACCCTCGAACGTTGAAGAAGGCAAAGAAAGAAATCGACGAAGAAATCGGTCAGGAAAAGGCAGTGACTGAATCAGACGTAGGCAAACTGGTTTACATTCAAGCCATCGTCAAGGAGGCGTTGCGTTTATATCCCCCGGGACCTCTTACGCCGTCGCGTGAGTTTATCGAAGATTGCGTTATCGCCGGCTACCACGTAAAAAAGGGAACCCGACTGTTTCCGAACGTTCCGATTATTCAAACCGATCCGAAAGTCTGGCCTGATCCGATGGAGTTTAAGCCGGAGAGGTTTCTTACGACCCACAAAGACGTTGACGCACGGGGCAAACACTACAATCTGATTCCATTCGGAAGTGGAAGAAGAATTTGCCCAGGCATCAACTTTGCCCTCCAAGTCGTTCCCTTCATTCTGGCGAGGTTTCTGCAAGCGTTTGACATAGAAACTCCGTCTAATGAACCGGTTGATATGACTGAAAGCACTTCTTTTGCCAACATGAAAGTCACCCCTCTTGAAGTCCACATCACTCCTCGTCCTCACTCTGCTCTGTAG 1572 47.84 MDFILSLPNPVTAVAVVILLSLWFSRRRRRGTTELKPPPEVPGGWPLIGHLLMLGGPEPPHRALGTMADKCGPIFTIRLGQRPALIVSNSEMVKECFGENDASIFARPQTLATKLLTYDSALFAFTANHPFWREMRKITTLELLSNRRLELLKHVRITEVETWISEMHDFWIARKGKDSSEKVIVEMKEWFSNLTFNVILKVLVGKRCFGSTEKADEEEARRFRHAQDEFFRYLGMFLPADAIPFLKWFDFGGHQKGMKKTAKEMDSILEGWLEEHKRRRLSGVSENDKDFMDVMLSTLDYKNLHGYDTDTIIKATILGVIAAATDTSTVTLTWATSLLLNNPRTLKKAKKEIDEEIGQEKAVTESDVGKLVYIQAIVKEALRLYPPGPLTPSREFIEDCVIAGYHVKKGTRLFPNVPIIQTDPKVWPDPMEFKPERFLTTHKDVDARGKHYNLIPFGSGRRICPGINFALQVVPFILARFLQAFDIETPSNEPVDMTESTSFANMKVTPLEVHITPRPHSAL 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32480229 32481885 - Bda002569.1 Bda01g00555 555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00555 523 PANTHER CYTOCHROME P450 82C3-RELATED 13 518 - -
Bda01g00555 523 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PANTHER CYTOCHROME P450 82A2 13 518 - -
Bda01g00555 523 Gene3D Cytochrome P450 27 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 SUPERFAMILY Cytochrome P450 34 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Bda01g00555 523 Pfam Cytochrome P450 39 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00555 523 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00555 - - - qsu:112023929 582.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00555 Bda03g00240 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00555 Bda-Chr1:32480229 Bda03g00235 Bda-Chr3:1820025 0 dispersed
Bda01g00555 Bda-Chr1:32480229 Bda01g00557 Bda-Chr1:32502486 0 proximal
Bda01g00503 Bda-Chr1:32044056 Bda01g00555 Bda-Chr1:32480229 0 transposed
Bda06g01071 Bda-Chr6:38032315 Bda01g00555 Bda-Chr1:32480229 1.26E-15 transposed
Bda01g00455 Bda-Chr1:31604956 Bda01g00555 Bda-Chr1:32480229 0 wgd
Bda01g00555 Bda-Chr1:32480229 Bda03g00233 Bda-Chr3:1807250 7.08E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g857 . Blo12g00923 Bda01g00555 Bda03g00240 Bpe02g00413 . . . . . . Cma09g00183 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01624 Csa03g04166 Chy04g00549 . . . . . . . . . . Cmo01g01943 Cmo09g00179 . . . Car09g00162 . . Bhi09g02056 . . . . . . . . . . . . . . . . Cme04g00637
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00555 Bda_Chr01 FPKM 2.737209 3.136974 5.305455 5.668178 10.93304 10.357215 9.53748 8.89481 9.800243