Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00557 ATGGATCCTTCTTCTTCTCCATATTTCAACGCCAGCACAGTTGGATTCCTTGCCATCCTAATCTTCTCTTACTATTTGCTCAGGAGATTAAGAGCTGGCTGTAAAGAAGGAAAAGCCCCTGAAGCAGCTGGTGGGTGGCCGCTCATGGGCCATCTTCATCTTCTGGGAGGCTCACAGCTTCCCCACATAACCTTAGCAGCCATGGCTGACAAGTACGGGCCTGTTTTCAGAATTCGAGTTGGTGTTCATGAAACCTTAGTGATAAGTAGCTGGGAGGCAGCTAAAGAATGCTTCACCACACACGACGCCGCTGTATCTTCCCGTCCAAAAATTCTTAGTGGCGAGCATTTGGGATATAAAAATGCCAGTTTTGGTTTTAGCCCGTACGGATATTATTGGCGAAACATAAGGAAGCTAATAGCGTCGGAGATACTTTCCAATCGCCGGGTAGAGCTTCTCCGGCATGTTCGAGAATCTGAAGTGAAGAACTCGTTAAAAGAGCTTTATCAACTATGGAATAAGAGAGAGAAAAGTTCCGGCGAGGTTCCAGTGGAGATGAAGCGATGGATTGGTGACATAAATATGAACGTAATTCTTATGATGGTATGTGGAAAAAAATATTTTCGCTCGTCGGCTAACTGCGATGAGAGAGAGTTGCGACAGTGTAGGATAGCCATGAGGGAGTTCTTCAGGTTGTCGGGAATGTTTCTGATCGGAGATGCCATCCCATATCTCAGCTGGCTAGATTTAGGTGGACACGTTAAGGCCATGAAAAAAGTGGCCAAAGAGTTGGACAGTATCGCTAGTGAATGGCTAGACGAACATCGCCGGAAGAAAGTTTCCGGTAAAGACAATGATGGTACACAAGACTTTATGGGTTTGTTGCTGTCGATTCTCGACGGCATGGATCTCGCCGGTTACGATTCCGATACAGTCAACAAAGCCACATCGATGGCAATCATAATAGGAGGAACCGATACAATCACAGTCGCTCTGATTTGGGCTCTTTGTTTGTTACTGAACAATAAACAATCATTGAGAAGAGCTAAAGAAGAGCTTGACCACTATGTCGGGAAAGAAAGGCTCGTAGACGAAGCTGATATCAGCAAACTGGTCTATCTCCAAGCCATTTTTAAAGAATCCATGCGTTTATACCCACCAGCACCGCTATCCGGTTTCCGGATATTCACCCAAGACTGCACCGTCGGCGGCTACCGCGTTCCAGCGGGAACACATCTAATAACGAATCTGTGGAAGATACAAACAGACCCCAGAGTATGGTCGGAGCCATTGGAGTTCAAACCCGAGAGATTTCTCGAAACCCATAAGAATATCGATGTGAAGGGCCATAATTTCGAGCTTATACCATTTGGAAGTGGACGAAGAGCTTGCCCGGGAATAGAATTTGGGGTGCAAATGGCGCAGCTGTTGTTGGCTAGTTTGATTCAGGCGTTCGAGATATCAGCCCCACCCGACGAGCCTCTCGACATGAGTGCTACCTTTGGGCTCACAAATATGAAGACCACCCCACTTGAAGTTCTCGTGAGACCCCGTCTATCACCAGCTGTTTACGAATAA 1578 46.64 MDPSSSPYFNASTVGFLAILIFSYYLLRRLRAGCKEGKAPEAAGGWPLMGHLHLLGGSQLPHITLAAMADKYGPVFRIRVGVHETLVISSWEAAKECFTTHDAAVSSRPKILSGEHLGYKNASFGFSPYGYYWRNIRKLIASEILSNRRVELLRHVRESEVKNSLKELYQLWNKREKSSGEVPVEMKRWIGDINMNVILMMVCGKKYFRSSANCDERELRQCRIAMREFFRLSGMFLIGDAIPYLSWLDLGGHVKAMKKVAKELDSIASEWLDEHRRKKVSGKDNDGTQDFMGLLLSILDGMDLAGYDSDTVNKATSMAIIIGGTDTITVALIWALCLLLNNKQSLRRAKEELDHYVGKERLVDEADISKLVYLQAIFKESMRLYPPAPLSGFRIFTQDCTVGGYRVPAGTHLITNLWKIQTDPRVWSEPLEFKPERFLETHKNIDVKGHNFELIPFGSGRRACPGIEFGVQMAQLLLASLIQAFEISAPPDEPLDMSATFGLTNMKTTPLEVLVRPRLSPAVYE 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32502486 32504278 - Bda002571.1 Bda01g00557 557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00557 525 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 SUPERFAMILY Cytochrome P450 45 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 Gene3D Cytochrome P450 33 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PANTHER CYTOCHROME P450 82C3-RELATED 13 524 - -
Bda01g00557 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Bda01g00557 525 Pfam Cytochrome P450 44 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda01g00557 525 PANTHER CYTOCHROME P450 FAMILY PROTEIN 13 524 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00557 - - - twl:120000203 685.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00456 Bda-Chr1:31624819 Bda01g00557 Bda-Chr1:32502486 0 dispersed
Bda01g00503 Bda-Chr1:32044056 Bda01g00557 Bda-Chr1:32502486 0 dispersed
Bda01g00557 Bda-Chr1:32502486 Bda03g00238 Bda-Chr3:1847152 0 dispersed
Bda01g00555 Bda-Chr1:32480229 Bda01g00557 Bda-Chr1:32502486 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g854 . . Bda01g00557 . . . . . . . . Cma09g00185 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01620 Csa03g04164 Chy04g00550 . . . . . . . . . . Cmo01g01942 . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00651
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00557 Bda_Chr01 FPKM 60.035294 47.526081 32.086155 29.756361 32.530407 31.988129 44.174015 12.116279 12.48135