Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00562 ATGCAGTCGAGCGGCTCTGATTCGCAGATGGCGCAGCAGCCGGAGCAGAATCAACGGCAACAATCACAGCCGCCGCTGCAGCAGCCGTGGATGGCGATGCAGTATCCTGCCGCGGCGATGGTAATGCAGCACCAGATGATGCCCCCTCAGCATTACCTTCCCTCGATACCGCCGCACTACATGCCATACCATCAGTATCAGCCGCATCATTCGCTTATGCTACAAGGTCAGCAGCATCACCAGGGATCTTCAGGCGAGAATAAGACGATATGGGTCGGCGATTTGCACCATTGGATGGACGAGAATTACCTTCATACTTGCTTCGTTTCTACTGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACAGGTTTATCAGAAGGCTACGGATTTGTGGAATTTTATTCCCACGCAACTGCCGAGAAAGTTCTGCAGAACTACAGTAGCATGTTTATGCCAAACACAGAACAACTTTTCCGCCTTAACTGGGCAACATTTAGCTCAGGAGAAAAGCGTTTAGATAATGGTCCTGATCTTTCTATCTTTGTAGGAGATTTAGCTGCAGATGTTACTGATAGTGTATTGCATGACACTTTTGCCAGTAGATTTCCATCAGTTAAGGCTGCAAAAGTTGTGTTTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGAGGTTTGGGGACGATAATGAGAGATCACAGGCCATGACAGAGATGAATGGTGCTTATTGTTCAAGCAGACCCATGCGGATTGGTGCAGCAACGCCAAGGAAGTCCTCTGGATACCAGCAGCAATTTTCTTCCCAAGTAGGTGGATATGGATCAAATGGTTCCTTTACTCATGGTTTTCAATCTGAAGTTGATTCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCTAATGTCAGTGATGAAGACCTTAAGCAGCCTTTCTCTCAGTATGGCGAGATCGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTGCAATTCGCCAACAGAAATAATGCCGAGGAAGCTTTACAAAAATTAAATGGAGCTGTGATTGGGAAGCAAACTGTACGACTTTCTTGGGGTCGGAACCCGGCAAACAAGCAGTTCAGAGGTGATTTTGGCAACCAGTGGAATGGACCATACTATGGAGGCCAGGTTTATGATGGATATGGATATGCTATGGCTTCCCCTCACGATCCGGGCATGTATGCTACATCTGCCGCAACCTATGGAGCTTACCCTTTCTATGGAACCCACCAACAGCAAGTAAACTGA 1290 46.43 MQSSGSDSQMAQQPEQNQRQQSQPPLQQPWMAMQYPAAAMVMQHQMMPPQHYLPSIPPHYMPYHQYQPHHSLMLQGQQHHQGSSGENKTIWVGDLHHWMDENYLHTCFVSTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYSSMFMPNTEQLFRLNWATFSSGEKRLDNGPDLSIFVGDLAADVTDSVLHDTFASRFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGAATPRKSSGYQQQFSSQVGGYGSNGSFTHGFQSEVDSTNTTIFVGGLDPNVSDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGAVIGKQTVRLSWGRNPANKQFRGDFGNQWNGPYYGGQVYDGYGYAMASPHDPGMYATSAATYGAYPFYGTHQQQVN 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32626186 32628835 - Bda002579.1 Bda01g00562 562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00562 429 SMART rrm1_1 297 364 IPR000504 GO:0003723
Bda01g00562 429 SMART rrm1_1 182 256 IPR000504 GO:0003723
Bda01g00562 429 SMART rrm1_1 89 161 IPR000504 GO:0003723
Bda01g00562 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 368 IPR000504 GO:0003723
Bda01g00562 429 SUPERFAMILY RNA-binding domain, RBD 288 396 IPR035979 GO:0003676
Bda01g00562 429 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 23 428 - -
Bda01g00562 429 CDD RRM2_SECp43_like 180 259 - -
Bda01g00562 429 CDD RRM1_SECp43_like 89 169 - -
Bda01g00562 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 253 IPR000504 GO:0003723
Bda01g00562 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Bda01g00562 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 361 IPR000504 GO:0003723
Bda01g00562 429 SUPERFAMILY RNA-binding domain, RBD 166 287 IPR035979 GO:0003676
Bda01g00562 429 Gene3D - 87 166 IPR012677 -
Bda01g00562 429 CDD RRM3_NGR1_NAM8_like 295 366 - -
Bda01g00562 429 SUPERFAMILY RNA-binding domain, RBD 60 154 IPR035979 GO:0003676
Bda01g00562 429 MobiDBLite consensus disorder prediction 1 26 - -
Bda01g00562 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Bda01g00562 429 Gene3D - 167 285 IPR012677 -
Bda01g00562 429 Gene3D - 286 400 IPR012677 -
Bda01g00562 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 428 - -
Bda01g00562 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00562 - - - cit:102622145 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00562 Bda-Chr1:32626186 Bda06g01045 Bda-Chr6:36790448 3.12E-168 dispersed
Bda06g00395 Bda-Chr6:6159848 Bda01g00562 Bda-Chr1:32626186 4.10E-10 dispersed
Bda07g01176 Bda-Chr7:13993418 Bda01g00562 Bda-Chr1:32626186 2.49E-16 dispersed
Bda09g01524 Bda-Chr9:46913498 Bda01g00562 Bda-Chr1:32626186 7.38E-12 dispersed
Bda13g00604 Bda-Chr13:7053100 Bda01g00562 Bda-Chr1:32626186 1.23E-08 dispersed
Bda02g00635 Bda-Chr2:47252686 Bda01g00562 Bda-Chr1:32626186 1.86E-104 transposed
Bda03g00108 Bda-Chr3:969039 Bda01g00562 Bda-Chr1:32626186 5.59E-08 transposed
Bda01g00562 Bda-Chr1:32626186 Bda01g01608 Bda-Chr1:51929890 2.77E-13 wgd
Bda01g00562 Bda-Chr1:32626186 Bda03g00225 Bda-Chr3:1737678 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00562 Bda_Chr01 FPKM 3.915228 4.298168 1.19043 1.452889 0.536663 0.887278 0.683319 0.327178 0.219094