Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00566 ATGGATGAGGAAATCGAGGAGGGGATGCTTGTTGAAGAAGATGCACAGCCCTTTACCGACGTTAGCGAGACTGAGACGAAGTCGCCGTTTGGTATGTTGCGAGAGAGCAAGAGTTCTATTGAAGAGGTCGTGACTAAGATGCTCTCCATTAAGAAACAAGGTCACCCTAAATCTCAACTCAGAGAACTCGTTACTCAAATGTTCCTTCACTTCGTCAATCTTCGCCAGGCAAATCGTTCCATCTTGTTAGAAGAAGATCAGGTGAAAGCAGAAACAGAGCGTGCAAAGGCTCCAGTTGACTTAATAATCTTACAACTTCATAATTTGATGTATGAGAAAGGTCATTATATCAAAGCAATAAAAGCCTGCAAAGACTTTAAGACTAAATATCCAGACATTGAACTCGTATCTGAGGATATATTTTCTCGTGATGCACCTGAAGAGATTAAAGATTCTATCAGGTCAAAGGACAGAGTGCACAACCTGATGCTGCAAAGGCTTGATTATGAGCTATTCCAGAGAAAGGAGTTGTCCAAGTTTCATGAGAAACTGGAACAACAAAAGAAAAACCTTTTGGAGGCAATTGCAAACCGAAAGAAATTTTTGTCAAGTCTACCTTCACACCTCAAGGCTCTAAAGAAAGCATCTTTGCCAGTACAGAACCAATTAGGGTTTCAGCATACGAAGAAACTAAAGCAACACCAATTAGCTGAGCTTCTTCCACCCCCTCTCTATGTGATCTACTCTCAGTTCTTGGCACAAATGGAAGCATTTGGAGAGCCTATTGATCTGGAGATAATGGGAAGTTTGAAGGATGCACAAGCTTTCGCCCGGCATCAAGCTAATAAGGAAAATGGCATATCTGCCAATGTGGAAAATTCCAGGCTGGAAGATGATGCACCAGAAGAGGAAGATGATGGCCAAAGGAGGAGAAAACGGCCAAAGAGGGTTACCGGAAAAGAAAACCCAGAACAGGCGGGTATATATCAAGTTCATCCACTTAAAATTCTACTTCATATATATGAAGACGAATCCTCTAAGCCGAAATCAGGAAAACTTCTTTCTTTGAAGTTTGAATACTTGCTAAAGTTGAATGTTATATGTGTTGGGACTGAAGGATTTAGTGAAGGACCTGAAGAAAACATATTATGCAATTTATTTCCTGATGACACTGGTCTTGAGCTTCCTCACCAGTCAGCCAAGCTCTTATCTGGTATCGGCCTCACATTTGATGAACGGAGAACTTCAAGACCTTATAAATGGGCGCAGCACTTGGGAGGAATTGATTTTTTGCCTGAAGTTCCTTTACTGGTCAGTGGTCAGGAATCTACAAGTGGTGAAACTACTAAATGTGATTTTGCATCAGGTCTTTCCCTGTATCGCCATCAGAATCGCATACAGACAGTAATGGAAAGAATACGTTCTCGAAAAAAAGCTCAGATGGCTCTTGTGGAACAGCTTGATTTCCTTGGGAAGCTCAGATGGCCTGACCTGACATGTAAAGGTCTTCCATGGGCAGTGCATACTCCGTTATGCAGTTTGGAAGGTTGGTCACTTGTAGGTCAAGGTCACGCTTCATCTGCTCCTGTAATTGAGTACCAGAAGTCTAATGTTGAGCATTCCAGGCAACTTACTTTCATTTCCAAAAGTGTTACTCCTCAAATCAATCTTGTAAAACTATCCAGTTTTCGTAAATATGATGAGGATCCTGATCTCACACTGGATAGTGATAGTGATCTGGATGAGCTTCTGCCACCGGAGCCAGAGACAGACGCCGAAGCTTCCCCTCAATTTTCTGAGGTAGCCAGAAATTCATGGATAGATTATGGGGTCAAGGAATTTCGTCTTGTTTTTACCAGGAAAGTGGGTGCAAGTGGCAGAAGAATTGAGTTACTTGCGAAGATGAAGATCAGTATGGAATATCCTGTTCGGCCTCCTCTACTTGCCTTGAATTTTTGCACTAAATATTCTGATGATAACCATGGCAAGAGCGAGGATTTTGAGTGGTACAATGAACTTCGGGCAATTGAAGCAGAGTACATTATGCCTTTTATGCTTCTTTTGCAGTCAACTGTGTCCCAGAGTACGCTCTTTGACCACTTGATAAATATTTGGGAATTCAACCCTGGACCAAATCCTGGGACCTGTAGCCTTTATTTTTTGGTGGATTTTAAGTTTCAGTCACCCCTTTACAGACAGGTAGTGGCATCAGTCTTCTTTAAGGAGGTTGTATCACGGCTTGTCAATTCTTTTGACGAACGTTGCCGTTTAATCTATGGACCAGGCATTGCTGTCCATGAAAAGCCATACAGCCAAAGGGCCTGA 2325 42.24 MDEEIEEGMLVEEDAQPFTDVSETETKSPFGMLRESKSSIEEVVTKMLSIKKQGHPKSQLRELVTQMFLHFVNLRQANRSILLEEDQVKAETERAKAPVDLIILQLHNLMYEKGHYIKAIKACKDFKTKYPDIELVSEDIFSRDAPEEIKDSIRSKDRVHNLMLQRLDYELFQRKELSKFHEKLEQQKKNLLEAIANRKKFLSSLPSHLKALKKASLPVQNQLGFQHTKKLKQHQLAELLPPPLYVIYSQFLAQMEAFGEPIDLEIMGSLKDAQAFARHQANKENGISANVENSRLEDDAPEEEDDGQRRRKRPKRVTGKENPEQAGIYQVHPLKILLHIYEDESSKPKSGKLLSLKFEYLLKLNVICVGTEGFSEGPEENILCNLFPDDTGLELPHQSAKLLSGIGLTFDERRTSRPYKWAQHLGGIDFLPEVPLLVSGQESTSGETTKCDFASGLSLYRHQNRIQTVMERIRSRKKAQMALVEQLDFLGKLRWPDLTCKGLPWAVHTPLCSLEGWSLVGQGHASSAPVIEYQKSNVEHSRQLTFISKSVTPQINLVKLSSFRKYDEDPDLTLDSDSDLDELLPPEPETDAEASPQFSEVARNSWIDYGVKEFRLVFTRKVGASGRRIELLAKMKISMEYPVRPPLLALNFCTKYSDDNHGKSEDFEWYNELRAIEAEYIMPFMLLLQSTVSQSTLFDHLINIWEFNPGPNPGTCSLYFLVDFKFQSPLYRQVVASVFFKEVVSRLVNSFDERCRLIYGPGIAVHEKPYSQRA 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32680887 32696187 - Bda002583.2 Bda01g00566 566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00566 774 MobiDBLite consensus disorder prediction 281 324 - -
Bda01g00566 774 Gene3D - 654 760 IPR023393 -
Bda01g00566 774 PANTHER FMS INTERACTING PROTEIN 17 690 IPR019163 -
Bda01g00566 774 MobiDBLite consensus disorder prediction 572 588 - -
Bda01g00566 774 Pfam Fms-interacting protein/Thoc5 73 430 IPR019163 -
Bda01g00566 774 Coils Coil 174 197 - -
Bda01g00566 774 MobiDBLite consensus disorder prediction 570 597 - -
Bda01g00566 774 MobiDBLite consensus disorder prediction 304 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00566 K13174 THOC5; THO complex subunit 5 - csv:101203145 880.552
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g764 Blo01g01530 Blo12g00957 Bda01g00566 . Bpe02g00427 . . Bma01g02276 . . Cma01g01839 Cma09g00228 Car01g01433 . . Cpe06g00159 . . . . . . . . . . . . . . . Cone4ag1575 . Cone17ag0844 Cone20ag0191 . Csa04g02407 . . . . . . . . . . . Cmo01g01898 Cmo09g00220 . . . Car09g00196 . . Bhi09g03327 . . . Hepe01g1761 Mch11g0287 . . . . . . . . . . Chy07g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008491 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 1 1 35