Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00569 ATGGAGATGGTGGATCAGCTCAAGTCGGAGGATCAGATGGAGATTATGACGATGATGATGATGCATCAGACGGACAAGAATCGAGCATTTTGCGGCGCCTACAATGACATTGCTCAATTCTCACCGTCTGATTATGCTGGTGCAAGTGTCTGTGACAGCATCACAGCCGTCCCACATTGTTCAGACGGCCTTCGGCCATCGTCTTATTCCTTCCTAAATTTTCCTTCTTCTTCTTCTTTCACGAGTGCCAGCCCTCCTTTATCTACAGAGAAGCAGACGACATTTTTATCCAGGTGGGAGAGTGAATTATCAATTGGAGAAAATGGCTTCTTCTCTTCACCTGATTCTGGGAGACCTACTTCAATGGCGACGATGAGGGAGATGATTTTCCGAATAGCGGCTATGCAGCCGATTCTCATAGACCCAGAAGCGGTAAAGCCACCGAAACGGAGGAACGTGAAGATATCGAAGGACCCACAAAGCGTTGCGGCTCGGCATAGGAGAGAGAAGATAAGTGAAAGAATCAGAATTCTTCAGAGGCTGGTACCAGGTGGGACAAAAATGGATACAGCTTCCATGCTAGACGAAGCTATTCATTACGTCAAATTTTTGAAGGGCCAAGTGCAGTCGCTGGAGAGGGCTGCAGCCAGCAGCCTGACTGGTATGGGGTACCCAATTGCAGTCTCTAATGGCGGCAGCTATTTTCCTATGGCAAGGGATTGCCCATTGCCTCCTGGAATTTAG 744 48.25 MEMVDQLKSEDQMEIMTMMMMHQTDKNRAFCGAYNDIAQFSPSDYAGASVCDSITAVPHCSDGLRPSSYSFLNFPSSSSFTSASPPLSTEKQTTFLSRWESELSIGENGFFSSPDSGRPTSMATMREMIFRIAAMQPILIDPEAVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKGQVQSLERAAASSLTGMGYPIAVSNGGSYFPMARDCPLPPGI 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32705315 32706058 - Bda002586.1 Bda01g00569 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00569 247 SMART finulus 161 210 IPR011598 GO:0046983
Bda01g00569 247 CDD bHLH_AtIND_like 156 212 - -
Bda01g00569 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Bda01g00569 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 213 IPR036638 GO:0046983
Bda01g00569 247 Pfam Helix-loop-helix DNA-binding domain 164 204 IPR011598 GO:0046983
Bda01g00569 247 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 238 IPR045843 GO:0003700|GO:0006355
Bda01g00569 247 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 238 - -
Bda01g00569 247 Gene3D - 154 221 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00569 Bda03g00209 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00569 Bda-Chr1:32705315 Bda04g00329 Bda-Chr4:47712302 1.41E-41 dispersed
Bda15g00050 Bda-Chr15:1977107 Bda01g00569 Bda-Chr1:32705315 9.55E-12 transposed
Bda01g00569 Bda-Chr1:32705315 Bda03g00209 Bda-Chr3:1641488 1.97E-141 wgd
Bda01g00569 Bda-Chr1:32705315 Bda08g01375 Bda-Chr8:54326517 2.80E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15365 PF00010 HLH 1.70E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00569 - - tcc:18591179 232.261