Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g00574 | ATGGAGGGAGAGTGTTATTCCAGAGTTTCTTCTTCGTCGTCTTCAACTTCCAGCACCGAGCAGAAGCGTAAGCAGAGGCAGCTCCTCCGAGAGCTCAAGCCCTACAGAGGAATTAGGATGCGGAAGTGGGGAAAGTGGGTGGCGGAGATTAGAGAGCCAAATAAAAGGTCGAGGATTTGGCTGGGTTCTTACGTTACCCCCGTCGCCGCTGCCCGCGCCTACGACACTGCCGTCTTCTACCTCCGGGGACCCTCTGCCCGCTTGAATTTTCCGGAGCTCATATTCCGAGAAGAGCAGCCGCAAGATTTGTCCGCCGCTTCTATACGCAAAATAGCCACCGAAGTTGGGGCTAGAGTCGACGCCGTTCAAAGAGCTCTTCTTTCGTCGACCTCCGTTTCTACTCAGCGGCCCGAAAAGCCTGATTTGAACCAGTTTCCAAGCCCTGAAACTTCCGACGAAGACTGA | 465 | 54.41 | MEGECYSRVSSSSSSTSSTEQKRKQRQLLRELKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYVTPVAAARAYDTAVFYLRGPSARLNFPELIFREEQPQDLSAASIRKIATEVGARVDAVQRALLSSTSVSTQRPEKPDLNQFPSPETSDED | 154 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32744987 | 32745451 | - | Bda002593.1 | Bda01g00574 | 574 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g00574 | 154 | PRINTS | Ethylene responsive element binding protein signature | 35 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g00574 | 154 | PRINTS | Ethylene responsive element binding protein signature | 73 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g00574 | 154 | SUPERFAMILY | DNA-binding domain | 34 | 92 | IPR016177 | GO:0003677 | |
Bda01g00574 | 154 | PIRSF | PTI6 | 4 | 151 | IPR017392 | GO:0003700 | |
Bda01g00574 | 154 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 10 | 152 | - | - | |
Bda01g00574 | 154 | MobiDBLite | consensus disorder prediction | 129 | 154 | - | - | |
Bda01g00574 | 154 | MobiDBLite | consensus disorder prediction | 129 | 147 | - | - | |
Bda01g00574 | 154 | Gene3D | AP2/ERF domain | 34 | 92 | IPR036955 | GO:0003700|GO:0006355 | |
Bda01g00574 | 154 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Bda01g00574 | 154 | SMART | rav1_2 | 34 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g00574 | 154 | ProSiteProfiles | AP2/ERF domain profile. | 34 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g00574 | 154 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 10 | 152 | - | - | |
Bda01g00574 | 154 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bda01g00574 | 154 | CDD | AP2 | 35 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g00574 | 154 | Pfam | AP2 domain | 35 | 83 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00574 | Bda-Chr1:32744987 | Bda03g00206 | Bda-Chr3:1623800 | 1.41E-77 | dispersed | |
Bda01g00574 | Bda-Chr1:32744987 | Bda03g00204 | Bda-Chr3:1615397 | 1.55E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15368 | PF00847 | AP2 | 6.50E-11 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g00574 | K09286 | - | csv:101219005 | 210.69 |