Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00574 ATGGAGGGAGAGTGTTATTCCAGAGTTTCTTCTTCGTCGTCTTCAACTTCCAGCACCGAGCAGAAGCGTAAGCAGAGGCAGCTCCTCCGAGAGCTCAAGCCCTACAGAGGAATTAGGATGCGGAAGTGGGGAAAGTGGGTGGCGGAGATTAGAGAGCCAAATAAAAGGTCGAGGATTTGGCTGGGTTCTTACGTTACCCCCGTCGCCGCTGCCCGCGCCTACGACACTGCCGTCTTCTACCTCCGGGGACCCTCTGCCCGCTTGAATTTTCCGGAGCTCATATTCCGAGAAGAGCAGCCGCAAGATTTGTCCGCCGCTTCTATACGCAAAATAGCCACCGAAGTTGGGGCTAGAGTCGACGCCGTTCAAAGAGCTCTTCTTTCGTCGACCTCCGTTTCTACTCAGCGGCCCGAAAAGCCTGATTTGAACCAGTTTCCAAGCCCTGAAACTTCCGACGAAGACTGA 465 54.41 MEGECYSRVSSSSSSTSSTEQKRKQRQLLRELKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYVTPVAAARAYDTAVFYLRGPSARLNFPELIFREEQPQDLSAASIRKIATEVGARVDAVQRALLSSTSVSTQRPEKPDLNQFPSPETSDED 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32744987 32745451 - Bda002593.1 Bda01g00574 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00574 154 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Bda01g00574 154 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Bda01g00574 154 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Bda01g00574 154 PIRSF PTI6 4 151 IPR017392 GO:0003700
Bda01g00574 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Bda01g00574 154 MobiDBLite consensus disorder prediction 129 154 - -
Bda01g00574 154 MobiDBLite consensus disorder prediction 129 147 - -
Bda01g00574 154 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Bda01g00574 154 MobiDBLite consensus disorder prediction 1 26 - -
Bda01g00574 154 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Bda01g00574 154 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Bda01g00574 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Bda01g00574 154 MobiDBLite consensus disorder prediction 1 22 - -
Bda01g00574 154 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Bda01g00574 154 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00574 Bda-Chr1:32744987 Bda03g00206 Bda-Chr3:1623800 1.41E-77 dispersed
Bda01g00574 Bda-Chr1:32744987 Bda03g00204 Bda-Chr3:1615397 1.55E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15368 PF00847 AP2 6.50E-11 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00574 K09286 - csv:101219005 210.69