Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00576 ATGGAAGCCGGAGAGGATTGCTGTGTGAAAGTTGCGGTCCATGTCCGACCTCTCATCGGCGACGAGCGCCTTCAAGGGTGTAAGGATTGCGTAACGGTTATTCCTGGGAAGCCACAGGTACAGATTGGTACTCATTCATTCACATTTGATCATGTTTATGGAAGCACTAGTACTCCCTCATCTTCCATATTTGAAGAATGTGTATCTCCACTTGTCGATGGATTGTTTCAAGGATATAATGCTACTGTTCTCGCTTATGGTCAGACGGGATCTGGAAAAACGTATACCATGGGGACTGGTCTCAAGGATGGTAGCCAGATAGGAATAATCCCTCAAGTTATGAATTCTTTGTTCAGCAAGATTGAAACCTCGAAGCATCAAACTGAATTTCAGTTGCATGTTTCCTTTATCGAGATTCTCAAAGAAGAAGTACAAGACTTGCTGGATCCTTCTTCTTTGGGGAAATCAGAGGGTGCAAATGGACATGCCGGAAAGATACATGTCCCAGGGAAAACACCTATACAAATTCGAGAATCGTCCAATGGTGTCATTACCCTGGCAGGATCAACTGAAGTTAGTGTGAGCTCACTAAAAGAAATGTCTGCTTATCTGGAGCAGGGATCACTGAGCAGGGCAACAGGGAGTACCAATATGAACAATCAATCAAGTCGCTCGCATGCCATTTTCACCATTACATTAGAGCAAATGCAGAAGTTTAATCCAAACTTCCCTGGAGATAGCAGTCCTATTGAAGGTATGACTGATGAATATCTATGTGCAAAGTTGCATCTAGTTGATCTTGCTGGGTCAGAACGAGCCAAACGAACAGGTTCTGATGGTCTGCGTTTTAAGGAAGGGGTTCATATAAACAAAGGTCTTCTTGCTCTTGGCAACGTTATTAGTGCCCTTGGTGATGAAAAAAAACGCAAAGAAGGTGTTCATGTTCCTTATCGGGACAGTAAACTTACACGACTATTACAGGATTCACTTGGCGGAAACAGCAGAACTGTTATGATAGCCTGTATAAGTCCTGCTGATATCAATGTGGAGGAAACTCTTAACACTTTAAAATATGCCAATCGAGCTCGCAATATCCAGAATAAGCCAATTGTCAATAGAGATCCCACGTCCAATGAGATGCTAAAGATGCGCCAGCAACTAGAATATCTACAGGCAGAGCTGTTTGCTCGCAGAGGAGGATCTTCATCTGAGGAAGTGCAGATTCTCAAGGAAAGGATTTCATGGCTTGAAGCTGCCAATGAGGATCTTTGTCGGGAACTGCGTGTGTTTCGTAGAAGATACAACAGTGTAGAACAATATGAGCCAGATACTCAAGATGCTGACAGCTCCCCTGCCAAAAATGATGGGCTCAAAAGGGGATTGCACACTATGGAATCATCTAATTACCAAATAGCTGAAGGCATTACAGGGGATTCAAAGGAAATTGATGAGGAAGTGGCAAAGGAATGGGAGCACACGCTTCTTCAAAATACTATGGACAAGGAGTTAAACGAATTGAACAAACTATTGGAGCAGAAAGAGTTGGAAATGAAACTTTTTGGTGGATATGACACTGTTGTACTCAAACAACATTTTGGGAAGAAAATCATGGACTTAGAAGATGAGAAACGAGTTGTTCAGCAAGAGAGGGATCAGCTGCTGGCTGAAGTTGAAAATCTTGCTGCTTGTTCTGATGAACAAACACAAAAACTACAAGATTCTCATACACAAAAACTTAAGTCACTGGAGGCTCAGATTCTAGATCTGAAGAAGAAACAAGAGAACCAAGTTCAGCTTTTAAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGAGATTGCAAGATGAGATTCAACTTATAAAGGCACAGAAGGTTCAATTGCAACAAAGGATGAAACAAGAAGCAGAACAATTTCGACAGTGGAAAGCCTCTCGTGAGAAGGAGCTGCTGCAGTTGAAAAAGGAAGGCAGGCGAAATGAATATGAAAGGCATAAGCTGCAGGCGTTGAATCAAAGACAAAAAATGGTTCTTCAAAGGAAGACAGAAGAGGCTGCAATGGCCACCAAAAGACTGAAAGAATTACTTGAGGGTCGTAAGTCTAATGGCCGGGACAACTCAGTTATTTCAAATGGCAATGGAACGAATGTACAGAACAATGAAAAATCCTTGCAGCGCTGGCTTGATCATGAGTTGGAAGTCATGGTGAATGTGCATGAAGTTCGTTTTGAATATGAAAAACAAAGTCAAGTGCGAGCTGCTCTAGCAGAAGAGTTAGCCTTGCTAAAGCAAGTGGATGAGTTTGCCTCCAAGGGTCTCAGCCCCCCAAGGATGAAAAATGGTTTTGCTAGAATGTCCTCTATGTCACCTAATGCAAGAATGGCCAGAATATCATCTCTTGAGAACATGCTGGGTATATCATCTAATTCACTAGTAGCAATGGCTTCACAACTCTCAGAGGCAGAAGAACGAGACCGTGCCTTGACCAGCCGTGGACGATGGAACCAGTTGCGCTCAATGGGAGATGCAAAGAACTTGCTGCAGTACATGTTCAATTCTTTGGCAGATGCAAGGTGTCAGTTATGGGAGAAGGACATAGAAATGAAAGAAATGAAGGAGCAGCTTAAAGAACTTGTCGGGCTGTTACGACAGAGTGAGACTAGGAGAAAGGATGCTGAGAAGGAACTGAAACTGAGAGAGCAGGCTGTTAAAGCTGCATTGGCTACGAAAGCTTCGGATTGCTCTGAACATGAAAACTCACATAATTCATTGAAACATTTTGCGGATGACATGAGTGGCCCTCTTTCTCCAATGTCTGTACCGGTTCCAAAACAACTAAAATATACAGCAGGCATTGTTAATGGCTCAGTTAGAGAATCAGCAGCATTCATAGATGAGAAACGAAAGATGGTACCACTTGGACAATTATCAATGAAAAAATTAGCAGGTGTAGGACAATCTGGGAAGTTGTGGAGATGGAAAAGAAGTCATCACCAGTGGCTGCTTCAGTTCAAATGGAAGTGGCAGAAGCCATGGAGGCTTTCAGAATGGATCAGACATAGTGATGAAACAATCATGAGGTCAAGGCCTCGTCGACAGGCTCTGCTTGGTGTTATGTAA 3117 42.77 MEAGEDCCVKVAVHVRPLIGDERLQGCKDCVTVIPGKPQVQIGTHSFTFDHVYGSTSTPSSSIFEECVSPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLKDGSQIGIIPQVMNSLFSKIETSKHQTEFQLHVSFIEILKEEVQDLLDPSSLGKSEGANGHAGKIHVPGKTPIQIRESSNGVITLAGSTEVSVSSLKEMSAYLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMQKFNPNFPGDSSPIEGMTDEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINVEETLNTLKYANRARNIQNKPIVNRDPTSNEMLKMRQQLEYLQAELFARRGGSSSEEVQILKERISWLEAANEDLCRELRVFRRRYNSVEQYEPDTQDADSSPAKNDGLKRGLHTMESSNYQIAEGITGDSKEIDEEVAKEWEHTLLQNTMDKELNELNKLLEQKELEMKLFGGYDTVVLKQHFGKKIMDLEDEKRVVQQERDQLLAEVENLAACSDEQTQKLQDSHTQKLKSLEAQILDLKKKQENQVQLLKQKQKSDEAAKRLQDEIQLIKAQKVQLQQRMKQEAEQFRQWKASREKELLQLKKEGRRNEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEGRKSNGRDNSVISNGNGTNVQNNEKSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELALLKQVDEFASKGLSPPRMKNGFARMSSMSPNARMARISSLENMLGISSNSLVAMASQLSEAEERDRALTSRGRWNQLRSMGDAKNLLQYMFNSLADARCQLWEKDIEMKEMKEQLKELVGLLRQSETRRKDAEKELKLREQAVKAALATKASDCSEHENSHNSLKHFADDMSGPLSPMSVPVPKQLKYTAGIVNGSVRESAAFIDEKRKMVPLGQLSMKKLAGVGQSGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRSRPRRQALLGVM 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32754377 32764718 + Bda002596.1 Bda01g00576 576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00576 1038 Coils Coil 536 556 - -
Bda01g00576 1038 Coils Coil 572 644 - -
Bda01g00576 1038 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 2 1035 - -
Bda01g00576 1038 Coils Coil 677 697 - -
Bda01g00576 1038 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 2 1035 - -
Bda01g00576 1038 PRINTS Kinesin heavy chain signature 261 279 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda01g00576 1038 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda01g00576 1038 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda01g00576 1038 PRINTS Kinesin heavy chain signature 315 336 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda01g00576 1038 Coils Coil 406 426 - -
Bda01g00576 1038 ProSiteProfiles Kinesin motor domain profile. 8 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda01g00576 1038 SMART kinesin_4 6 373 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda01g00576 1038 CDD KISc_KIF4 7 366 - -
Bda01g00576 1038 Gene3D Kinesin motor domain 2 393 IPR036961 -
Bda01g00576 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 397 IPR027417 -
Bda01g00576 1038 Coils Coil 492 516 - -
Bda01g00576 1038 Pfam Kinesin motor domain 38 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda01g00576 1038 Coils Coil 853 908 - -
Bda01g00576 1038 ProSitePatterns Kinesin motor domain signature. 260 271 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00576 - - - zju:107419991 1738.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00576 Bda-Chr1:32754377 Bda07g00613 Bda-Chr7:7478974 2.13E-70 dispersed
Bda06g00688 Bda-Chr6:9507818 Bda01g00576 Bda-Chr1:32754377 1.74E-16 transposed
Bda07g00033 Bda-Chr7:535965 Bda01g00576 Bda-Chr1:32754377 4.69E-56 transposed
Bda08g00291 Bda-Chr8:3049796 Bda01g00576 Bda-Chr1:32754377 1.13E-43 transposed
Bda11g00799 Bda-Chr11:7943854 Bda01g00576 Bda-Chr1:32754377 0 transposed
Bda12g00631 Bda-Chr12:29309413 Bda01g00576 Bda-Chr1:32754377 7.54E-49 transposed
Bda01g00576 Bda-Chr1:32754377 Bda14g00526 Bda-Chr14:3800337 3.75E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005992 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 0 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00576 Bda_Chr01 FPKM 4.279167 5.700393 2.827561 2.041523 12.089771 6.187995 15.739382 0.702319 0.57174