Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00578 ATGGAACCCCGAACTGTTGTCTGGATGGCGAATCGCGAGTACCCTGTAAATGGAAAACAGTCGAAGCTCGCGCTCCTAAAAAGTGGGAATCTGATCCTCGATGATGCTGGTAATTACGTTGTTTGGGAGACCAAGACGGCCGCAATATCCTCTATCCGGTTATGTGTCCATAATTCCGGTAATCTTGTTCTTTCTTCAGATGGAGATACTCTCTGGCAAAGCTTTGATTTTCCGACGGACACTCTTTTACCCCTGCAACCTTTTACTAAAGTCACGCAGCTTGTTTCGTCAAGAACTGTCAGAAACGATTCATCTGGGTTTTACAATTTTTCTTCGACGCCTTTAGCAACCAGAACCCAGAGAAACTTAACTCCAGATTACTTTCTCGCTTCGACGGGTTTCAAACGGTTCACCTTCGCCGAGCTGAAGAAGGCAACGAAGGATTTCAGCGAGGAAATAGGAAGGGGCGCCGGAGGAGTTGTGTACAAAGCAACACTCCCCGATCTTCGCGTGGCGGCGGTGAAGAGGCTGCCCGAGGCTAAGCAAGCAGAAGCAGAGTTTCTCGCAGAAGCGAGCACAATCGGTAGACTTAATCATATGTACTTGATACAAATGTGGGGCTACTGCGCTGAGGGAAAACACAGACTCCTCGTTTACGAATTCATGGAGCATGGGTCGCTGGCCATTAATCTTTCTTCAAAAACGCTCGATTGGAAAAGAAGATTTGAAATCGCTCTAGGCACAGCAAAAGGGTTGGCTTATCTGCACGAAGAGTGCTTAGAATGGGTTCTCCATTGCGACGTCAAGCCCCAAAATATTCTTCTGGATGCAAACTATTTACCAAAAGTTGCAGATTTTGGGACGTCCAAGCTTTTAAACAGAGGGGAACCTTCAAATTTAGGTTTCTCGAGGGTGAGAGGAACGAGAGGCTATATGGCTCCTGAATGGCTCTATAAGTTGCCAATTACGTCTAAAGTGGATGTCGCAGCATTAGATGTGTTTACCGAAGAGCCTCCGCCGACAGACCATAAGCTGGTTCACCATGAAAATGTGATTGTAACTCCACACCTGGGCGCTACTACAATGGAAGCGCAGGAGGGGGTGGCTATTGAGATTGCAGAAACTGTTATTAGTGCATTGAACGGGGAGCTTGCCGGAAATGCTGTAAATGCACCAATGGTTTTATCAGAACTTGTTCCGTATCTTGGTCTGGCAGAAAAGCTTGGAAGATTGTCTCTTCAACTGAGTGCGTGTGGAAGTGGAGTAAAAGCAGTGAAGGTATCTTATGGCTCTGCCAGAAATCCAGATCATCTCCGTGCACAACTACTTCGGGCTATGCTCATTAAAGGTCTAGTCGAGCCAGTTTCAGGTCTTCTCGTGAACTTGGTTAATGCAGATTTCATTGCAAAACAGAGGGGACTAAGAATAGCAGAAGAGCATATCGTGCTAGACGACTCGCCTGAGCACCCACTTAAGTTTATCCAGGTTCAAATCGCAAATATAGAATCGACTTTCGCCGGAGCAATTTCAGAGCGCGGTGAGATTAAAGTGGAGGGAAGAGTAAAATACGGGGAACCGCGTTTGACCACTGTTGGATCGTTTAGGGTAGATGTGAGCTTGGAAGGTAGCCTCATGCTTTGCCGGCAGGTCGATCAACCTGGTACGATCGGAAAAGTAGGAACCATCTTAGGCGACGAGAACGTAAATGTGAGTTTTATGAATGTTAAGAGAACAGGTCCTCAGAAACAATCTGTCATGATAACATGCGTGGATGAGGAACCCAGCAGAGAAGCTATGACAAAAATTAGAGATATACCCGCCATTGAAGAGTCTGTCTTCATCAAATTATAG 1851 46.3 MEPRTVVWMANREYPVNGKQSKLALLKSGNLILDDAGNYVVWETKTAAISSIRLCVHNSGNLVLSSDGDTLWQSFDFPTDTLLPLQPFTKVTQLVSSRTVRNDSSGFYNFSSTPLATRTQRNLTPDYFLASTGFKRFTFAELKKATKDFSEEIGRGAGGVVYKATLPDLRVAAVKRLPEAKQAEAEFLAEASTIGRLNHMYLIQMWGYCAEGKHRLLVYEFMEHGSLAINLSSKTLDWKRRFEIALGTAKGLAYLHEECLEWVLHCDVKPQNILLDANYLPKVADFGTSKLLNRGEPSNLGFSRVRGTRGYMAPEWLYKLPITSKVDVAALDVFTEEPPPTDHKLVHHENVIVTPHLGATTMEAQEGVAIEIAETVISALNGELAGNAVNAPMVLSELVPYLGLAEKLGRLSLQLSACGSGVKAVKVSYGSARNPDHLRAQLLRAMLIKGLVEPVSGLLVNLVNADFIAKQRGLRIAEEHIVLDDSPEHPLKFIQVQIANIESTFAGAISERGEIKVEGRVKYGEPRLTTVGSFRVDVSLEGSLMLCRQVDQPGTIGKVGTILGDENVNVSFMNVKRTGPQKQSVMITCVDEEPSREAMTKIRDIPAIEESVFIKL 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32802761 32811128 - Bda002598.2 Bda01g00578 578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00578 616 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 118 330 - -
Bda01g00578 616 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 110 - -
Bda01g00578 616 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 398 516 IPR045626 -
Bda01g00578 616 SUPERFAMILY Protein kinase-like (PK-like) 129 331 IPR011009 -
Bda01g00578 616 Gene3D - 390 542 IPR029009 -
Bda01g00578 616 CDD ACT_3PGDH-xct 544 616 - -
Bda01g00578 616 SUPERFAMILY alpha-D-mannose-specific plant lectins 3 80 IPR036426 -
Bda01g00578 616 Gene3D Transferase(Phosphotransferase) domain 1 222 374 - -
Bda01g00578 616 SMART serkin_6 147 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00578 616 Gene3D - 1 75 IPR036426 -
Bda01g00578 616 SMART blect_4 2 78 IPR001480 -
Bda01g00578 616 Gene3D Phosphorylase Kinase; domain 1 111 221 - -
Bda01g00578 616 ProSitePatterns Protein kinases ATP-binding region signature. 153 175 IPR017441 GO:0005524
Bda01g00578 616 Pfam Protein kinase domain 150 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00578 616 SUPERFAMILY Serine metabolism enzymes domain 394 538 IPR029009 -
Bda01g00578 616 Gene3D - 543 616 - -
Bda01g00578 616 Pfam ACT domain 550 606 IPR002912 -
Bda01g00578 616 SUPERFAMILY ACT-like 534 609 IPR045865 -
Bda01g00578 616 ProSiteProfiles Protein kinase domain profile. 147 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00578 616 ProSiteProfiles ACT domain profile. 544 616 IPR002912 -
Bda01g00578 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Bda01g00578 616 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 323 358 IPR006140 GO:0051287
Bda01g00578 616 ProSiteProfiles Bulb-type lectin domain profile. 1 77 IPR001480 -
Bda01g00578 616 Pfam D-mannose binding lectin 5 87 IPR001480 -
Bda01g00578 616 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 328 390 IPR036291 -
Bda01g00578 616 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 118 330 - -
Bda01g00578 616 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 4 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00578 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - vvi:100259056 406.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00578 Bda-Chr1:32802761 Bda13g01262 Bda-Chr13:35030767 9.60E-15 dispersed
Bda05g00630 Bda-Chr5:54426192 Bda01g00578 Bda-Chr1:32802761 1.49E-20 transposed
Bda08g00769 Bda-Chr8:10010480 Bda01g00578 Bda-Chr1:32802761 4.12E-137 transposed
Bda08g00808 Bda-Chr8:11356525 Bda01g00578 Bda-Chr1:32802761 3.70E-141 transposed
Bda14g01453 Bda-Chr14:19680376 Bda01g00578 Bda-Chr1:32802761 1.48E-136 transposed
Bda01g00578 Bda-Chr1:32802761 Bda03g00196 Bda-Chr3:1569272 1.36E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g717 Blo01g01516 . Bda01g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1109 Cone3ag0997 Cone10ag1017 . . . . Blo17g00896 . . . . Bpe05g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69421 PF00069 Pkinase 6.00E-39 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00578 Bda_Chr01 FPKM 4.406757 5.270426 0.0 0.0 1.832179 1.679838 1.384827 0.0 0.0