Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00585 ATGAGCTGCAATGGCTGCAGAGTTCTGAGAAAGAGATGTGGCGAAACGTGCGTACTAAGATCGTGTTTGGTTTGGATCGACAGCGCCGAAGCACAAGGCCATGCCACTTTGTTTCTTGTGAAGTTCTATGGCCGAAGCAACCTTTTCTCCTTCATCACCGCCGCCCCTGATCAACAAAGATCCTCTTTATTTCGGTCTCTCCTCTTTGAAGCCTGTGGTCGGACGATAAACCCAGTGAGCGGAGTGGTGGGACTTTTTTCGACCGGTAAATGGCACGTTTGCGAAGCCGCTGTTCAATCAGTTCTCACCCACGGTTTTCTTCATCCGCTAAACGGAATTCTCTCGTTAGCTCCAATGCAGCAAGATCTCTTAGACTTGTCCATATCGTCGGGGAATTACAGTGGGAGCAATTATCAGCCGTCGGATTTCCAAATCTCTTTCCCAGATGACTGCGAGTCGGCGACGAACAAAAGTTCCAACCAGCAAAAGCTTTTAAATTTATTAGTTTGA 510 47.84 MSCNGCRVLRKRCGETCVLRSCLVWIDSAEAQGHATLFLVKFYGRSNLFSFITAAPDQQRSSLFRSLLFEACGRTINPVSGVVGLFSTGKWHVCEAAVQSVLTHGFLHPLNGILSLAPMQQDLLDLSISSGNYSGSNYQPSDFQISFPDDCESATNKSSNQQKLLNLLV 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32868651 32869257 - Bda002605.1 Bda01g00585 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00585 169 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Bda01g00585 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 134 - -
Bda01g00585 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 134 - -
Bda01g00585 169 Pfam Lateral organ boundaries (LOB) domain 2 102 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00585 Bda01g01591 CCT
Bda01g01591 Bda01g00585 ECH
Bda01g00585 Bda01g01591 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00585 Bda-Chr1:32868651 Bda11g01472 Bda-Chr11:21231420 2.42E-51 dispersed
Bda01g00585 Bda-Chr1:32868651 Bda01g01591 Bda-Chr1:51762676 3.63E-51 wgd
Bda01g00585 Bda-Chr1:32868651 Bda08g01358 Bda-Chr8:54032646 5.78E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15369 PF03195 LOB 8.70E-23 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00585 - - mnt:21383826 191.815