Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00587 ATGTGTCATTTTGGTTGTTGTCCTAGCCAAATTCAAAGTCCTATAAGCAGTTACTCTAGAGCACTCTTCCAAAGGCTTCTTTTAGTGCTGGAACACATGGAGTTTTTTAGAGCTTTTTGTGAAGGAGAGTGTCACTCATCAAGTTCATTAATTTCCCTTGAAGATTGGGTGGATTTTGTACCAGATTTTTTTGTTCAACATCCTTATTTTCTGGAGCATGAGGAACTGAGCTTCCCACCATTCACTGTCGGCAACAGTCATCAAGCCACTGTTGGTGTTGCAGGGATTAATGATTACTGGTTGCATTCTCTGGATACTTTCAACACTGACTTCCACTGGAACAAACCAGAGAGTAGTCTTTGTGGTAATGGTAATAATAGTGTTTTAATATCTGGTTCGCTGCATGAAGCAGAGCACCTTAATGGTTGTAATCAGGTTCCTACTGAAAACAATTTGTCGGTGATTACACGTGATGGAATAGTGGGTGAAGGCTCTTTATTATCAGAATGGACTGAAGTTGTGCCGGATGCTACTGCTCGTGTTGATGAAGATGTGGGCTATAAGAAATTTGAAAATCATGAGGAATCTGACGAGGGATTGCCCCTTAAAAGGAAATTTCATGGTCTAGAAGTTGAAAAAAGAGTTGATCATAAAAACAGTACCAACTCACCTGACAACCTGAAGAAAAGAACTAAGATTTCACGGGATGGCCAGCATGACAGCATTACTGTAAAATCAAAGAAAGGCCAGAAGCACGCCCCAAAAGGGAAATCTGAAGAAGGGGGCAAAGCGGTATCTGATGGACAGAGCTGTAGCAGTTCCAGCTCAGAAGAAGAGATTGCTTCTTGTGAAAATATTGGAGAACCAACTTCGGAGTCTGTGGCTCGAGCAGGAACAGTTTGTGAAAAGATTAGAGCAGGTAGAGGGTCAGCGACTGATCCTCAGAGTGTTTATGCAAAGAAAAGAAGAGAAAAAATTAACGAGCGGCTGAGAATCTTACAAACTCTTGTACCCAATGGAACAAAGGTTGACATTAGCACTATGCTGGAGGAAGCAGTCCAGTATGTAAAGTTTTTGCAACTCCAAATTCAGCTTTTAAGCTCAGATGACCTGTGGATGTACGCTCCATTAGCCTATAATGGATTTGACATTGGCCTGCACCAAAAGATGTCTCTATTTCAACGACAGTAA 1191 41.48 MCHFGCCPSQIQSPISSYSRALFQRLLLVLEHMEFFRAFCEGECHSSSSLISLEDWVDFVPDFFVQHPYFLEHEELSFPPFTVGNSHQATVGVAGINDYWLHSLDTFNTDFHWNKPESSLCGNGNNSVLISGSLHEAEHLNGCNQVPTENNLSVITRDGIVGEGSLLSEWTEVVPDATARVDEDVGYKKFENHEESDEGLPLKRKFHGLEVEKRVDHKNSTNSPDNLKKRTKISRDGQHDSITVKSKKGQKHAPKGKSEEGGKAVSDGQSCSSSSSEEEIASCENIGEPTSESVARAGTVCEKIRAGRGSATDPQSVYAKKRREKINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIQLLSSDDLWMYAPLAYNGFDIGLHQKMSLFQRQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32876628 32878183 + Bda002607.1 Bda01g00587 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00587 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 374 IPR036638 GO:0046983
Bda01g00587 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Bda01g00587 396 Gene3D - 313 373 IPR036638 GO:0046983
Bda01g00587 396 MobiDBLite consensus disorder prediction 265 289 - -
Bda01g00587 396 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 38 391 - -
Bda01g00587 396 CDD bHLH_AtIND_like 311 373 - -
Bda01g00587 396 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 391 - -
Bda01g00587 396 MobiDBLite consensus disorder prediction 211 294 - -
Bda01g00587 396 MobiDBLite consensus disorder prediction 211 262 - -
Bda01g00587 396 Pfam Helix-loop-helix DNA-binding domain 320 360 IPR011598 GO:0046983
Bda01g00587 396 SMART finulus 316 365 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00587 Bda01g01589 CCT
Bda01g01589 Bda01g00587 ECH
Bda01g00587 Bda01g01589 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00587 Bda-Chr1:32876628 Bda08g00680 Bda-Chr8:7225733 6.35E-38 dispersed
Bda01g00587 Bda-Chr1:32876628 Bda01g01589 Bda-Chr1:51739577 1.66E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15371 PF00010 HLH 1.30E-08 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00587 - - qsu:112027126 249.98