Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00604 ATGGGCTCCGATGGGGTCTATACCGGTCTCGTTCTTGGACTGATCAATCACCCCAAGGAAGAGAAGTCTATCCAATCAATTCCCGAGAAAAACAAGAATCCATCATCAAAATTTGACAACTCCTTTCTCACACTAGCCCTCTCCGACGCGACTAACCGACCTGCAACAATCTCCGACGTTAGTAAGCAGGTTTGCGGCGAACCATATGATATACTCCCGCAGGCTTCTTCTGCTAGCGCTGTGTCATCGTTTTCAAACTCCTCCAGTTTTAAGCGCGATAGAGACTTCTGCGATGGTGAAGAGATAGAAGCAGAGACCGAGGTAGACATACAGCCAATCTCTTCTAAGGTCAGTGAGGAAGAAGAAGATGGCACTGGCAGTCCGAGGAAAAAACTTAGACTCACAAAAGATCAGTCCGCCATTTTAGAATACAGCTTCAAAGAGCATGCAACTCTAAACCCCAAACAAAAACAAGACTTGGCAAGGAAGTTGAGTCTAAGCACAAGACAAGTGGAAGTCTGGTTTCAAAACAGGAGGGCGAGAACCAAGCTGAAGCAAACCGGAGAGAGCTGCGAGCTGCTGAAGAAATGCTGCGAATCACTAACAGAAGAGAACAAAAGGCTAAGGAAAGCGCTTCAAGACATGAAAACACTAAAATCAGCTCCTCATCCGCCATTTTACATGCAGCTCAAAACAGCAACTCTCTCCATTTGCCCTTCTTGCGAGAGAATATGCAGCGCCGGCGATGGGTCATCTCCCACCAGCACTCTGTTAGTTGGTTCAAACGTTGGTTAA 795 46.79 MGSDGVYTGLVLGLINHPKEEKSIQSIPEKNKNPSSKFDNSFLTLALSDATNRPATISDVSKQVCGEPYDILPQASSASAVSSFSNSSSFKRDRDFCDGEEIEAETEVDIQPISSKVSEEEEDGTGSPRKKLRLTKDQSAILEYSFKEHATLNPKQKQDLARKLSLSTRQVEVWFQNRRARTKLKQTGESCELLKKCCESLTEENKRLRKALQDMKTLKSAPHPPFYMQLKTATLSICPSCERICSAGDGSSPTSTLLVGSNVG 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33050342 33051354 + Bda002627.1 Bda01g00604 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00604 264 MobiDBLite consensus disorder prediction 114 131 - -
Bda01g00604 264 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Bda01g00604 264 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Bda01g00604 264 Coils Coil 191 221 - -
Bda01g00604 264 PANTHER - 74 253 - -
Bda01g00604 264 SUPERFAMILY Homeodomain-like 119 186 IPR009057 -
Bda01g00604 264 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Bda01g00604 264 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 74 253 - -
Bda01g00604 264 SMART halz 185 230 IPR003106 GO:0006355|GO:0043565
Bda01g00604 264 SMART HOX_1 127 189 IPR001356 GO:0003677
Bda01g00604 264 CDD homeodomain 128 186 IPR001356 GO:0003677
Bda01g00604 264 Gene3D - 122 191 - -
Bda01g00604 264 MobiDBLite consensus disorder prediction 108 131 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00604 Bda03g00154 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00604 Bda-Chr1:33050342 Bda14g01299 Bda-Chr14:14333252 6.52E-56 dispersed
Bda04g00754 Bda-Chr4:56760556 Bda01g00604 Bda-Chr1:33050342 1.64E-07 transposed
Bda01g00604 Bda-Chr1:33050342 Bda03g00154 Bda-Chr3:1282273 5.47E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15375 PF00046 Homeodomain 8.80E-17 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00604 K09338 - qsu:111996753 247.669