Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00605 ATGGAGGAATACAATCAGCTAAGAGAGAATTCGAATCCCAGGGGAAATTTCTTGTACACCTCGGCTGTTCTTGCAGGCAATTCTTCTCCTTCTAATTATGGAAGATCGACAACTGGTGGCTCAAACGTGAGCTCTCAACCAACCCAGATGGCCATTAATACCTTTCATGGCGACTGTTTTCAGTCTGATCCTATCGTTAAGACTGAAGCGTCCACTTCGATGCATAATGTTCAGAAATTTCATTACCCATCAATACGAGGCCATCACACTTCGGTTCAAAGGAACGATGAAGGGTCTAACGATGTCGAGGCTATAAAGGCCAAGATCATTGCCCATCCCCAGTATTCTAACCTTTTACAAGCTTATATGGATTGTCAAAAGGTGGGAGCTCCGCCTGAAGTGGCTGCAAGGCTGGCTGAGGCTCGCCGGGAGTTTGAAGCACGACAGCGATCGGCGTCGAGGGATTATCCGAAAGATCCCGAACTTGATCAGTTCATGGAAGCGTATTACGATATGCTGGTGAAGTATCGGGAAGAGATTACGAGGCCAATCCAGGAAGCAATGGATTTCATGAATCGGATTGAATCTCAACTCAATTCGCTTTGTAATGGACCTGTGCGGATCTTCCCCTCCGATGACAAGTGCGAGGGCCTTGGTTCATCGGAGGACGAACAGGAGAACAGCGGAGGGGAAATGGAGCTTCCGGAGATCGATCCTAGAGCCGAAGATCGAGAGCTGAAGAACCATCTTCTAAGGAAGTATAGTGGTTATTTAAGCAGTCTCAAGCAAGAACTGTCAAAGAAAAAAAAGAAAGGAAAACTACCCAAAGATGCCAGGCAAAAGCTACTCAGCTGGTGGGAGTTGCATTACAAATGGCCATACCCCTCGGAGACGGAGAAGGTGGCGCTGGCCGAGTCTACCGGGTTGGACCAGAAGCAAATAAACAATTGGTTCATAAATCAAAGAAAGAGACACTGGAAACCTTCTGAAGATATGCAATTTATGGTGATGGATGGTCTTCATCCTCCCAGTGGAGCTCTCTATATGGACTCCCACTACATTGCTGATGGCCATTATCGGCTCGGACCGTGA 1092 47.25 MEEYNQLRENSNPRGNFLYTSAVLAGNSSPSNYGRSTTGGSNVSSQPTQMAINTFHGDCFQSDPIVKTEASTSMHNVQKFHYPSIRGHHTSVQRNDEGSNDVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVAARLAEARREFEARQRSASRDYPKDPELDQFMEAYYDMLVKYREEITRPIQEAMDFMNRIESQLNSLCNGPVRIFPSDDKCEGLGSSEDEQENSGGEMELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPSGALYMDSHYIADGHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33054749 33057130 - Bda002628.1 Bda01g00605 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00605 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677
Bda01g00605 363 Pfam KNOX2 domain 158 202 IPR005541 GO:0003677|GO:0005634
Bda01g00605 363 Pfam KNOX1 domain 104 146 IPR005540 GO:0003677|GO:0005634
Bda01g00605 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677
Bda01g00605 363 SUPERFAMILY Homeodomain-like 266 342 IPR009057 -
Bda01g00605 363 SMART HOX_1 267 332 IPR001356 GO:0003677
Bda01g00605 363 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Bda01g00605 363 MobiDBLite consensus disorder prediction 212 239 - -
Bda01g00605 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981|GO:0006355
Bda01g00605 363 Gene3D - 270 332 - -
Bda01g00605 363 CDD homeodomain 277 329 IPR001356 GO:0003677
Bda01g00605 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677|GO:0006355
Bda01g00605 363 SMART ELK_2 245 266 IPR005539 GO:0003677
Bda01g00605 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 355 - -
Bda01g00605 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677|GO:0005634
Bda01g00605 363 Pfam ELK domain 245 266 IPR005539 GO:0003677
Bda01g00605 363 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 355 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00605 Bda03g00153 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00605 Bda-Chr1:33054749 Bda09g01593 Bda-Chr9:47367375 2.90E-90 dispersed
Bda09g00064 Bda-Chr9:1265540 Bda01g00605 Bda-Chr1:33054749 2.10E-25 dispersed
Bda06g00867 Bda-Chr6:11933162 Bda01g00605 Bda-Chr1:33054749 2.88E-12 transposed
Bda11g01278 Bda-Chr11:13413309 Bda01g00605 Bda-Chr1:33054749 1.31E-53 transposed
Bda15g00550 Bda-Chr15:8647777 Bda01g00605 Bda-Chr1:33054749 2.82E-89 transposed
Bda01g00605 Bda-Chr1:33054749 Bda03g00153 Bda-Chr3:1277899 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15376 PF03791 KNOX2 1.40E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00605 - - tcc:18591910 544.658