Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g00607 | ATGACGACGATGATCGGCGAACTGACGAGATCGTGTCACCACTGCGACGTGCCTCCATGGGATCCAACGTTTCCCGTTGTTATTACTTCCTCTGTTAACTTCAATGCAAATGCATGGGGCCATGACTCTGTCATGGCCATGCGCGGTTGTCTTCCCTCACACCATCCAGCCACGGACGAAGTCGACATGCCGGTTGATGTCTTTTCTTCTGACTATTTTCGCATATTCGACTTTAAGGTACGGCGATGTGTGCGGGGTAGGGCGCATGACTGGACGGAGTGTCCGTACGCTCATCCGGGAGAGAAAGCTCGCCGGAGAGACCCGAGGAAGTATCATTACTCGGGGACGCCGTGTGAGGAGTTTCGAAAAGGAAGTTGCAGGAAGGGCGACTCTTGCGAGTTTGCGCATGGAGTCTTCGAGTGTTGGCTCCACCCGGCTCGTTATCGGACTCAGCCGTGCAAGGACGGCCTCGATTGCCACAGGCGGGTATGTTTTTTCGCTCACTCCCCGGAACAACTCCGGATTATTAATCAGAACGATCTGCCAACTCAAGGACCGTACGAGTTATTTGTTGGCGGCTCTCCTTCTTCTGTTCGCATCGGACTGAAAGAACCATTTGTTTCATCTCCTACATCAATTCTTGCATCGCCGCCTCTATCTCCCCTCTCTGAAGCGTCTCCCATGCCGCCTAATAGACCCCCGATTAGCTGCGAATCGGTGTCGGAAATCGTTTCCTCTATGCAGAACGTCCATCTGGCGAGGAAAAAGAAGAGCTATCCGCGCCAATGGAAGTTCGACAATCCAAATCGTTCAGGACTATCTGCATGTGAATACTGGGGCCAGAATTGCGAAGAAGAGGAGCCAGCAATGGAAAGAGTTGAATCCGGTAGAAACCTACGAGTGAAAATGTATGCGAAACTGAGTAAAGAGAACTCACTAGGAAGAAACGAATCGGCGGCGTCATCCCCCGACATCGGCTGGGTGTCGGAGCTAATCAAGTGA | 1002 | 52.2 | MTTMIGELTRSCHHCDVPPWDPTFPVVITSSVNFNANAWGHDSVMAMRGCLPSHHPATDEVDMPVDVFSSDYFRIFDFKVRRCVRGRAHDWTECPYAHPGEKARRRDPRKYHYSGTPCEEFRKGSCRKGDSCEFAHGVFECWLHPARYRTQPCKDGLDCHRRVCFFAHSPEQLRIINQNDLPTQGPYELFVGGSPSSVRIGLKEPFVSSPTSILASPPLSPLSEASPMPPNRPPISCESVSEIVSSMQNVHLARKKKSYPRQWKFDNPNRSGLSACEYWGQNCEEEEPAMERVESGRNLRVKMYAKLSKENSLGRNESAASSPDIGWVSELIK | 333 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 33068489 | 33069490 | + | Bda002630.1 | Bda01g00607 | 607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g00607 | 333 | SMART | c3hfinal6 | 112 | 138 | IPR000571 | GO:0046872 | |
| Bda01g00607 | 333 | SMART | c3hfinal6 | 147 | 170 | IPR000571 | GO:0046872 | |
| Bda01g00607 | 333 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 116 | 137 | IPR000571 | GO:0046872 | |
| Bda01g00607 | 333 | ProSiteProfiles | Zinc finger C3H1-type profile. | 113 | 139 | IPR000571 | GO:0046872 | |
| Bda01g00607 | 333 | PANTHER | UNKEMPT FAMILY MEMBER | 39 | 264 | IPR045234 | - | |
| Bda01g00607 | 333 | PANTHER | UNKEMPT FAMILY MEMBER | 267 | 333 | IPR045234 | - | |
| Bda01g00607 | 333 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 39 | 264 | - | - | |
| Bda01g00607 | 333 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 267 | 333 | - | - | |
| Bda01g00607 | 333 | Gene3D | - | 112 | 175 | - | - | |
| Bda01g00607 | 333 | MobiDBLite | consensus disorder prediction | 309 | 333 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00607 | Bda-Chr1:33068489 | Bda01g02031 | Bda-Chr1:56597951 | 1.55E-93 | dispersed | |
| Bda14g00247 | Bda-Chr14:1738302 | Bda01g00607 | Bda-Chr1:33068489 | 1.02E-52 | dispersed | |
| Bda01g00607 | Bda-Chr1:33068489 | Bda01g01588 | Bda-Chr1:51730347 | 1.55E-96 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15377 | PF00642 | zf-CCCH | 4.30E-06 | CL0537 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g00607 | - | - | vvi:100247549 | 347.821 |