Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00607 ATGACGACGATGATCGGCGAACTGACGAGATCGTGTCACCACTGCGACGTGCCTCCATGGGATCCAACGTTTCCCGTTGTTATTACTTCCTCTGTTAACTTCAATGCAAATGCATGGGGCCATGACTCTGTCATGGCCATGCGCGGTTGTCTTCCCTCACACCATCCAGCCACGGACGAAGTCGACATGCCGGTTGATGTCTTTTCTTCTGACTATTTTCGCATATTCGACTTTAAGGTACGGCGATGTGTGCGGGGTAGGGCGCATGACTGGACGGAGTGTCCGTACGCTCATCCGGGAGAGAAAGCTCGCCGGAGAGACCCGAGGAAGTATCATTACTCGGGGACGCCGTGTGAGGAGTTTCGAAAAGGAAGTTGCAGGAAGGGCGACTCTTGCGAGTTTGCGCATGGAGTCTTCGAGTGTTGGCTCCACCCGGCTCGTTATCGGACTCAGCCGTGCAAGGACGGCCTCGATTGCCACAGGCGGGTATGTTTTTTCGCTCACTCCCCGGAACAACTCCGGATTATTAATCAGAACGATCTGCCAACTCAAGGACCGTACGAGTTATTTGTTGGCGGCTCTCCTTCTTCTGTTCGCATCGGACTGAAAGAACCATTTGTTTCATCTCCTACATCAATTCTTGCATCGCCGCCTCTATCTCCCCTCTCTGAAGCGTCTCCCATGCCGCCTAATAGACCCCCGATTAGCTGCGAATCGGTGTCGGAAATCGTTTCCTCTATGCAGAACGTCCATCTGGCGAGGAAAAAGAAGAGCTATCCGCGCCAATGGAAGTTCGACAATCCAAATCGTTCAGGACTATCTGCATGTGAATACTGGGGCCAGAATTGCGAAGAAGAGGAGCCAGCAATGGAAAGAGTTGAATCCGGTAGAAACCTACGAGTGAAAATGTATGCGAAACTGAGTAAAGAGAACTCACTAGGAAGAAACGAATCGGCGGCGTCATCCCCCGACATCGGCTGGGTGTCGGAGCTAATCAAGTGA 1002 52.2 MTTMIGELTRSCHHCDVPPWDPTFPVVITSSVNFNANAWGHDSVMAMRGCLPSHHPATDEVDMPVDVFSSDYFRIFDFKVRRCVRGRAHDWTECPYAHPGEKARRRDPRKYHYSGTPCEEFRKGSCRKGDSCEFAHGVFECWLHPARYRTQPCKDGLDCHRRVCFFAHSPEQLRIINQNDLPTQGPYELFVGGSPSSVRIGLKEPFVSSPTSILASPPLSPLSEASPMPPNRPPISCESVSEIVSSMQNVHLARKKKSYPRQWKFDNPNRSGLSACEYWGQNCEEEEPAMERVESGRNLRVKMYAKLSKENSLGRNESAASSPDIGWVSELIK 333
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 33068489 33069490 + Bda002630.1 Bda01g00607 607
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00607 333 SMART c3hfinal6 112 138 IPR000571 GO:0046872
Bda01g00607 333 SMART c3hfinal6 147 170 IPR000571 GO:0046872
Bda01g00607 333 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 116 137 IPR000571 GO:0046872
Bda01g00607 333 ProSiteProfiles Zinc finger C3H1-type profile. 113 139 IPR000571 GO:0046872
Bda01g00607 333 PANTHER UNKEMPT FAMILY MEMBER 39 264 IPR045234 -
Bda01g00607 333 PANTHER UNKEMPT FAMILY MEMBER 267 333 IPR045234 -
Bda01g00607 333 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 39 264 - -
Bda01g00607 333 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 267 333 - -
Bda01g00607 333 Gene3D - 112 175 - -
Bda01g00607 333 MobiDBLite consensus disorder prediction 309 333 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00607 Bda-Chr1:33068489 Bda01g02031 Bda-Chr1:56597951 1.55E-93 dispersed
Bda14g00247 Bda-Chr14:1738302 Bda01g00607 Bda-Chr1:33068489 1.02E-52 dispersed
Bda01g00607 Bda-Chr1:33068489 Bda01g01588 Bda-Chr1:51730347 1.55E-96 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15377 PF00642 zf-CCCH 4.30E-06 CL0537 Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00607 - - vvi:100247549 347.821