Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00611 ATGGGAATCTGCATCTCCGCTGCATCTTCTCAGATTCACGAAACTGAAGATCATTCTCAGAAAACCGCCGGCGTCTTTGAGGAAAACTATGAACTGGGTTCTGTTTGTTCTAAACAGGGAAGCAAAGGGATCAATCAAGATGCTGCTGTTCTACATCAGGTTTCAGATTATGCAGAGGAAGATGGAGCTTTTGGCGGAGTTTTTGATGGGCATGGAAGGAACGGTCATTTCGTGAGCACAATAGTGAAAAATCGCTTGCCTCGCCTCTTACTAACTCAAAAGATTGCTCAATCGGAGCTCGGTGTGAGCAAAACAATGGCGGACTGTGATGCTGAAAATGACAGAGACTATGAAACGAGAGAACCAGAGTTTTTAACCAAAAACTACAAAGAATGGGAGGAGGCCATTATCAGCGCCTTCAAAGTGATGGATAAGGAGATCAAACTTCATGAAAATCTAGACTGCTCAACCAGCGGTACCACGGCAGTAGTTGCAGTAAAACAGGGAGAAGAACTAGTGATGGCAAATCTGGGTGACTCAAGAGCAGTTTTAGGAAGCCTTACAGAGGATGGAAAGATCAGAGGCGTCCAGTTGACCACTGATCTAAAACCTGGATTACCAGAGGAGGAAGAGAGGATAAAGAAGTGCAACGGGCGGGTGATGGCGCTGAAAGAAGAGGCGCACATCCAGCGAGTGTGGCTGCCGAACGAAGACGCGCCAGGCTTGGCCATGTCAAGAGCCTTCGGTGACTTCAGTCTGAAAGTGTGGGATGTGCTGAGCAACAACGAAGTAGCGGCCATAGCTTGGGAGGCGAGGAGCGAAGAGTCGGCGGCAAAAGCGGTGGTGGAGGCGGCGGAAGTCTCGTGGAAAAGCAAGTTTCCAAACTCAAAAGTGGATGACTGTTCTGTGGTTTGCCTTTTTTTCCAAAAGATGTTGCGAGTGGGAATTTGA 951 48.05 MGICISAASSQIHETEDHSQKTAGVFEENYELGSVCSKQGSKGINQDAAVLHQVSDYAEEDGAFGGVFDGHGRNGHFVSTIVKNRLPRLLLTQKIAQSELGVSKTMADCDAENDRDYETREPEFLTKNYKEWEEAIISAFKVMDKEIKLHENLDCSTSGTTAVVAVKQGEELVMANLGDSRAVLGSLTEDGKIRGVQLTTDLKPGLPEEEERIKKCNGRVMALKEEAHIQRVWLPNEDAPGLAMSRAFGDFSLKVWDVLSNNEVAAIAWEARSEESAAKAVVEAAEVSWKSKFPNSKVDDCSVVCLFFQKMLRVGI 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33108477 33110052 - Bda002635.1 Bda01g00611 611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00611 316 Coils Coil 206 226 - -
Bda01g00611 316 SUPERFAMILY PP2C-like 34 309 IPR036457 -
Bda01g00611 316 SMART PP2C_4 25 306 IPR001932 -
Bda01g00611 316 CDD PP2Cc 33 276 IPR001932 -
Bda01g00611 316 ProSiteProfiles PPM-type phosphatase domain profile. 32 308 IPR001932 -
Bda01g00611 316 Gene3D - 19 311 IPR036457 -
Bda01g00611 316 PANTHER ALPHABET, ISOFORM E-RELATED 255 310 - -
Bda01g00611 316 PANTHER ALPHABET, ISOFORM E-RELATED 1 254 - -
Bda01g00611 316 Pfam Protein phosphatase 2C 37 254 IPR001932 -
Bda01g00611 316 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 255 310 - -
Bda01g00611 316 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00611 - - - tcc:18588034 353.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00611 Bda13g01610 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00611 Bda-Chr1:33108477 Bda06g00320 Bda-Chr6:5253823 4.42E-84 dispersed
Bda01g00611 Bda-Chr1:33108477 Bda13g01610 Bda-Chr13:39617835 4.01E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g55 . . Bda01g00611 . . Bpe02g00479 . . . . Cma01g01746 . . . . . . . . . . . . . Cla05g01817 Cam05g1941 Cec05g1954 Cco05g2014 Clacu05g1933 Cmu05g1814 Cre05g1940 Cone4ag1650 . . . . . . . Blo17g00295 . . Bda13g01610 Bpe14g00255 . . . Sed13g1849 Cmo01g01764 . . . Car01g01358 . . Cpe02g00251 Bhi09g03173 Tan01g4645 Cmetu07g0228 . Hepe01g1867 Mch11g0402 . . . . . . . . . . . Cme07g00239
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011216 2 1 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00611 Bda_Chr01 FPKM 5.147856 6.042568 0.826834 1.029687 7.276986 6.831517 10.354678 7.057477 6.722816