Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00613 ATGGGTGACTCGAGCGATTCGGTGTCGGTGGACATGGAAGCGTTTTCTCTGGGGGGGAAGGAGCATGTTATCAGAACTTCTCATGGTCGTATTTCAGTGGTTGTGTATGGAGACCAAGAAAAACCAGCTCTTGTCACCTATCCTGATTTAGCCCTGAATTATATGTCATGCTTTCAAGGATTATTTTTCTGTCCAGAAGTTTGTTCCTTGTTGCTACACAACTTTTGCATTTACCATATCAGTCCACCAGGGCATGAGATGGGAGCTGCAACAATTGGTCTGAAAGATCCTGTTCTTTCAGCTGACGACTTGGCAGATCAGGTTGCAGAGGTTCTCAACTACTTTGGACTCAGTTCGGTCATGTGTATGGGAGTTATTGCCGGGGCTTATATACTTACCCTGTTCGCTTTGAAGTACAGACATCTTGTTCTTGGTCTGATTCTTATTTCTCCTCTATGCAAAGAACCCTCTTGGACAGAATGGTTGTACAATAAGGTACTCTCAAACTTGCTTTATTTTTATGGCATGTGTGGATTGGCGAAAGAGTTATTGATTAGGCGGTACTTCAGCAAGGGCGTGTTCGGCTCTGTTTTGGTTCCAGAGTCGGACATTGTTCAGGTTTGCAGAAGATCGCTCGACGAAAGGCAGAGTTTAAACGTCTGGCGGTTCCTTGAAGCAATGAATGGGAGAGCTGACATTACAGAGGGACTGAGAAAACTACAATGCCGATCACTAATATTTGTGGGGGATAGCTCCCCGTTCCACTCCGATGCTCTCTATATGACATCAAAGTTAGACAGGCGGTATAGTGCACTCGTGGAGGTTCAGGAATGCGGATCTATGGTAACGGAGGAACAGCCTCATGCAATGTTGATACCGATGGAGTACTTCTGCATGGGTTACAGCTTGTTCAGGCCATCTCAAGTAAGTCATAGTCCTAGAAGCCCCCTCAGCCCTTCTTGCATTGCTCCTGAGCTTCTTTCACCAGAAAGTATGGGCTTGAAGTTGAAACCGATAAAAACGAGAATATCATCGTAA 1038 45.38 MGDSSDSVSVDMEAFSLGGKEHVIRTSHGRISVVVYGDQEKPALVTYPDLALNYMSCFQGLFFCPEVCSLLLHNFCIYHISPPGHEMGAATIGLKDPVLSADDLADQVAEVLNYFGLSSVMCMGVIAGAYILTLFALKYRHLVLGLILISPLCKEPSWTEWLYNKVLSNLLYFYGMCGLAKELLIRRYFSKGVFGSVLVPESDIVQVCRRSLDERQSLNVWRFLEAMNGRADITEGLRKLQCRSLIFVGDSSPFHSDALYMTSKLDRRYSALVEVQECGSMVTEEQPHAMLIPMEYFCMGYSLFRPSQVSHSPRSPLSPSCIAPELLSPESMGLKLKPIKTRISS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33147436 33150612 + Bda002636.1 Bda01g00613 613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00613 345 Pfam Ndr family 21 304 IPR004142 -
Bda01g00613 345 Gene3D alpha/beta hydrolase 15 300 IPR029058 -
Bda01g00613 345 PANTHER PROTEIN NDL2 1 344 - -
Bda01g00613 345 SUPERFAMILY alpha/beta-Hydrolases 23 290 IPR029058 -
Bda01g00613 345 PANTHER N-MYC DOWNSTREAM REGULATED 1 344 IPR004142 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00613 - - - gmx:100804729 581.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00613 Bda-Chr1:33147436 Bda11g01057 Bda-Chr11:10377041 0 dispersed
Bda01g00613 Bda-Chr1:33147436 Bda11g01052 Bda-Chr11:10305706 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g66 Blo01g01473 . Bda01g00613 . . Bpe02g00482 . Bma01g02219 Cmo05g00108 Cmo12g00573 . Cma05g00101 . Car12g00581 Sed08g1762 Cpe07g00554 . Bhi04g00498 Tan02g1646 . . Hepe08g1384 . Lcy13g2178 . . . . . . . Cone4ag1654 Cone7ag1297 Cone17ag0920 Cone20ag0263 . . . . . . . . . . . . . . . . Cma12g00632 . Car05g00087 Cpe11g00081 . . . . . . . . . . . . . . . Lsi08g01576 Csa02g01844 Chy03g01639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000907 5 5 3 4 3 2 4 2 2 1 2 2 3 2 2 4 2 7 4 2 2 2 2 2 2 2 2 4 5 3 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00613 Bda_Chr01 FPKM 62.992165 69.787689 57.876202 58.442024 27.677011 27.945662 28.73702 124.286926 121.603195