Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00617 ATGATGTTGTCTTTTTCTCAGTCCTCATCATCGTCTGCGGTTGAGGTTGAAACCATCCGCAGAAGCCGAATTCTGGCAAGCAAGCTCTACTGCGACGTTCCTCTTTCGAAGGTGCCCCTGATTTATTCTTCATCATACGATATTGCTTTTCTCGGAATAGAAAAGTTGCACCCATTTGATTCCACTAAATGGGCTCGCATTTGTAAATTTCTGATCAACGATGGTGCTTTGGACCGAAATTGTATAGTTCAGCCTTTGGAAGCTTCGGAGGAGGATCTTCTTGTGGTGCATACAAAATCCTATTTAAACAGTTTGAAGTGCAGTGCAAATGTTGCAAAGATAACAGAGGTCCCTCCTGTTGCACTCTTCCCTAATATGGTGGTGCAGGCTAAAGTCCTTTCTCCATTTCGCTATCAGGTTGGAGGATCTATATTGGCCACAAAATTAGCAAAAGAACGAGGGTGGGCCATAAATGTTGGAGGAGGGTTCCATCACTGCTCAGGGGACAGAGGGGGAGGATTCTGTGCTTATGCTGATATTTCTCTTTGCATACACTTTGCCTTTACTCTATTAAGTATATCAAGGGTGATGATTATTGATCTTGATGCCCACCAAGGAAATGGCCACGAAACAGATTTTGCCAATGACAGACGGGTGTATATTTTGGATATGTTCAACCCCAATATATATCCATTTGATTACCAGGCTAGGAAACATATTGATCAGAGAGTTGAAGTGCCAGTAAGCCATTATCATCTTATCACAATATAA 771 42.28 MMLSFSQSSSSSAVEVETIRRSRILASKLYCDVPLSKVPLIYSSSYDIAFLGIEKLHPFDSTKWARICKFLINDGALDRNCIVQPLEASEEDLLVVHTKSYLNSLKCSANVAKITEVPPVALFPNMVVQAKVLSPFRYQVGGSILATKLAKERGWAINVGGGFHHCSGDRGGGFCAYADISLCIHFAFTLLSISRVMIIDLDAHQGNGHETDFANDRRVYILDMFNPNIYPFDYQARKHIDQRVEVPVSHYHLITI 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33163066 33165299 - Bda002639.1 Bda01g00617 617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00617 256 Gene3D Histone deacetylase domain 37 252 IPR037138 -
Bda01g00617 256 PANTHER HISTONE DEACETYLASE 11 11 247 - -
Bda01g00617 256 PANTHER HISTONE DEACETYLASE 11 11 247 - -
Bda01g00617 256 Pfam Histone deacetylase domain 57 238 IPR023801 -
Bda01g00617 256 CDD HDAC_classIV 57 247 IPR044150 GO:0004407|GO:0016575
Bda01g00617 256 PRINTS Histone deacetylase superfamily signature 195 210 IPR000286 -
Bda01g00617 256 PRINTS Histone deacetylase superfamily signature 161 184 IPR000286 -
Bda01g00617 256 SUPERFAMILY Arginase/deacetylase 37 238 IPR023696 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00617 K11418 HDAC11; histone deacetylase 11 [EC:3.5.1.98] - jre:118348779 401.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00617 Bda-Chr1:33163066 Bda15g00544 Bda-Chr15:8497047 3.78E-07 dispersed
Bda01g00617 Bda-Chr1:33163066 Bda10g00405 Bda-Chr10:36169169 7.95E-07 transposed
Bda01g00617 Bda-Chr1:33163066 Bda10g00379 Bda-Chr10:35433119 7.95E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g71 Blo01g01469 . Bda01g00617 . . Bpe02g00486 . . . . . . . . . . . . . . . . . . Cla05g01825 Cam05g1947 Cec05g1960 Cco05g2019 Clacu05g1939 Cmu05g1820 Cre05g1945 Cone4ag1657 . . . . . . . . . . . . . . . . Cmo01g01772 . . . . . . . Bhi09g03164 . . . Hepe01g1874 Mch11g0407 . . . . . . . . . . . Cme07g00231
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009853 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00617 Bda_Chr01 FPKM 4.968472 5.477947 4.976731 5.080845 0.357391 0.754517 0.0 5.264409 4.974517