Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00623 ATGGTGGATGAGAGCTTGTCCGTATTGACTTCTGCATCTGGCGAGATTTTAAGTGCGTCTTCCGATTCGAGAATTGAAGAGACTGTAGCCACCCTCCAATCTCATCACTCATACGGTTCAACAAATCAACCACCTTTATCGTCGAAGAAGAAGAGAAGTCTTCCAGGCAATCCAGACCCAGAAGCTGAAGTGATGGCTTTGTCTCCCAAAACTCTACTGGCAACGAATAGATTCATGTGTGAGATATGTAACAAAGGGTTCCAGAGAGATCAGAATCTGCAGCTACACAGAAGAGGACATAATTTGCCATGGAAACTGAAGCGAAGAACAAGCAAGGATGTGAAGAAAAAGGCGTATATATGTCCAGAAATTACATGTGTGCATCATGACCCTTCACGGGCTCTGGGAGACCTCACTGGAATTAAAAAGCATTTCTTCAGAAAACATGGCGAGAAGAAATGGAAGTGTGAAAAATGCTCTAAGCGGTACGCTGTACAGTCAGATTGGAAAGCTCACTCTAAGATTTGTGGAACAAGAGAGTATAGATGTGATTGTGGGGCCATCTTCTCAAGGAGGGACAGTTTCATCACGCACAGAGCTTTCTGCGATGCTCTAACTCAAGAGAGTGTTAAAGCAATGGCAGCAGTAAACCCACTACTTTCAGCTTCTCAATCTCAGCTCCATAGCTATGGCTGCTTCCAGCAAGTACCAGTGAAAAACGAACCAGACCTCAGATCAGCTCCTCAAGTTCCTCCTTGGCTGACAAACCAACCTGCGTTAAGTAGCATCCGCTTTACTCGACTTGGGGGCAAGCTCCCAAAAGGTGTTTTACTTGTTGGCCCCCCAGGCACAGGCAAGACAATGTTAGCAAGAGCTATTGCTGGAGAAGCTGGGGTGCCGTTCTTTTCATGCAGTGGCAGTGAGTTCGAAGAGATGTTTGTTGGTGTTGGAGCAAGGAGAGTGAGAGATTTATTTTCTGCTGCAAAGAAGCGGTCACCCTGCATTATCTTTATCGATGAGATTGATGCCATTGGTGGGAGTCGGAACCCAAAGGACCAACAATACATGAAAATGACTCTAAATCAGTTATTGGTTGAACTTGATGGCTTTAAACAAAATGAAGGAATAATTGTAATTGCAGCAACCAATTTTCCAGAGTCTTTGGATAAGGCCTTGGTGAGACCTGGGCGGTTTGATCGCCACATTGTTGTACCTAATCCAGATGTTGAAGGAAGACGGCAAATTTTGGAGTCTCACATGTTGAAGGTCCTGAAGGGGGATGATGTTGACATGATGATCATTGCAAGAGGAACTCCTGGTTTTTCAGGTGCTGATTTAGCTAACTTAGTGAACGTAGCTGCGCTGAAGGCAGCCATGGACGGCGCTAAAGCGGTGACCATGGGCAGTCAGATTCTGGCATTGCTTGAACAGGTGAACTCTCAGCAAAAGCAGCAACCACATCAGCAGCCGAAAGTTGCCACACAGAGCAGCTCACAGTCGAATCCGGTGCCGCCCTCCACCTCGAGTCCAGCTTCATCTGCTGCAGCTGCCGCTTCAGTAACTCTCATTGTCGCTGGGTTTCGAAAGTCTCCTCCAGATGATAAGTTTAAGGGTTTGCTTGTGATATACAGCAAGACTCAACAAATTAGGATGTTTATTGGCTTTTCTATCACAGTTTCTAGCAATTTCAGAATTAGGTTTGCTCAAAAACTATACGTTGAAATGGTAATATACATCTTCCTTTTTCTCTTTCTATTTGCAGGAACTCAGAATCGCAGAGTTGTGATAGAGAACAAATATGGAGAGAAGCTCATAGGAATATTGCGGGGCACGGGTTCGAAAGAGCTTGTCATCATTTGCCATGGATTTAGATCCTCAAAGGAAGACATCCCTATGGTGAATCTCGCAGCTGCATTAGAAAAAGAAGGGATTAGTGCTTTCCATTTTGACTTTGCCGGAAATGGGGAAAGTGAAGGTTCGTTTCAATATGGTAATTATCGCAGAGAATCTGATGATTTAAAAGCCGTGGTCCAGTATTTCCAGAAAGAAAAATACATCATAACTGCTATGATTGGGCACAGTAAAGGGGGAAATGTGGTGCTTTTGTATGCTTCGAGGTATAATGATGTTCATACGGTAGTCAATATATCTGGCCGTTTTAATCTTGAAAGGGGCATTGAAGGTCGTTTGGGAAAAGATTTTCTGCAAAGAATCAAGAAAAATGGATTTATTGATGTGAAGGATAGAAGAGGGAAGTTTGAGTATCGTGTCACGGAAGAAAGTCTGATGGACCGGCTCACAACCGATACACGTGCAGCCTGTCATCTCATTCATCAAGACTGCAGAGTGTTGACAGTTCATGGATCGATGGATAAGATTGTACCAGTTGAAGATGCCATGGAGTTTTCGAGATTAATAAGCAATCACAAACTGTGCATCATGGAAGGAGCGGATCACCATTATACATCACATCAACCGGAGTTGGCTTCAGCAGTAGTGAGCTTCATAAAGAGAGATTACGGTTCTAAAATTCATGCAAAAATGTAA 2547 43.89 MVDESLSVLTSASGEILSASSDSRIEETVATLQSHHSYGSTNQPPLSSKKKRSLPGNPDPEAEVMALSPKTLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKRRTSKDVKKKAYICPEITCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGAIFSRRDSFITHRAFCDALTQESVKAMAAVNPLLSASQSQLHSYGCFQQVPVKNEPDLRSAPQVPPWLTNQPALSSIRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKGDDVDMMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMGSQILALLEQVNSQQKQQPHQQPKVATQSSSQSNPVPPSTSSPASSAAAAASVTLIVAGFRKSPPDDKFKGLLVIYSKTQQIRMFIGFSITVSSNFRIRFAQKLYVEMVIYIFLFLFLFAGTQNRRVVIENKYGEKLIGILRGTGSKELVIICHGFRSSKEDIPMVNLAAALEKEGISAFHFDFAGNGESEGSFQYGNYRRESDDLKAVVQYFQKEKYIITAMIGHSKGGNVVLLYASRYNDVHTVVNISGRFNLERGIEGRLGKDFLQRIKKNGFIDVKDRRGKFEYRVTEESLMDRLTTDTRAACHLIHQDCRVLTVHGSMDKIVPVEDAMEFSRLISNHKLCIMEGADHHYTSHQPELASAVVSFIKRDYGSKIHAKM 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33235660 33247227 - Bda002645.1 Bda01g00623 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00623 848 MobiDBLite consensus disorder prediction 32 60 - -
Bda01g00623 848 Gene3D - 253 406 IPR027417 -
Bda01g00623 848 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Bda01g00623 848 CDD AAA 273 405 - -
Bda01g00623 848 SUPERFAMILY alpha/beta-Hydrolases 565 838 IPR029058 -
Bda01g00623 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 477 IPR027417 -
Bda01g00623 848 Pfam ATPase family associated with various cellular activities (AAA) 276 405 IPR003959 GO:0005524|GO:0016887
Bda01g00623 848 Gene3D Classic Zinc Finger 132 212 - -
Bda01g00623 848 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Bda01g00623 848 MobiDBLite consensus disorder prediction 32 50 - -
Bda01g00623 848 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Bda01g00623 848 PANTHER METALLOPROTEASE M41 FTSH 264 467 - -
Bda01g00623 848 SMART AAA_5 272 408 IPR003593 -
Bda01g00623 848 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4 MITOCHONDRIAL 264 467 - -
Bda01g00623 848 SMART c2h2final6 78 100 IPR013087 -
Bda01g00623 848 SMART c2h2final6 154 174 IPR013087 -
Bda01g00623 848 SMART c2h2final6 119 149 IPR013087 -
Bda01g00623 848 Pfam AAA+ lid domain 428 467 IPR041569 -
Bda01g00623 848 MobiDBLite consensus disorder prediction 479 511 - -
Bda01g00623 848 Pfam Serine aminopeptidase, S33 613 768 IPR022742 -
Bda01g00623 848 Gene3D - 407 479 - -
Bda01g00623 848 Gene3D Classic Zinc Finger 56 125 - -
Bda01g00623 848 ProSitePatterns AAA-protein family signature. 376 394 IPR003960 GO:0005524|GO:0016887
Bda01g00623 848 Gene3D alpha/beta hydrolase 588 846 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00623 Bda-Chr1:33235660 Bda10g00126 Bda-Chr10:3491616 4.31E-107 dispersed
Bda09g01084 Bda-Chr9:41301707 Bda01g00623 Bda-Chr1:33235660 4.31E-109 transposed
Bda12g01070 Bda-Chr12:42429856 Bda01g00623 Bda-Chr1:33235660 5.51E-114 transposed
Bda01g00623 Bda-Chr1:33235660 Bda03g00142 Bda-Chr3:1214916 1.23E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15378 PF12146 Hydrolase_4 4.90E-13 CL0028 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00623 K06889 - jre:109020495 395.971