Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00625 ATGAGCAAAGACGATGATGATCCACGAAAGGACGAATTAGCATCAAGGCTCGGATCATCTGGGTCGCAGTCGCCACGATGGTTGACGAACTTTCACCGTGATTTGATGGCGGGGGCGGTGATGGGCGGAGTTGTACACACGATTGTTGCCCCAATTGAGAGGTCGAAGCTTCTTTTACAGACCCAAGAGAGCAATCTGGCCATTGTTGGAGTTGGGCGAAAAAAATTTAAGGGTATGTTTGATTGTATTGCAAGAACAGTCAGGGAAGAAGGCATTCTTTCTCTCTGGAGAGGAAATGGTAGTAGCGTTCTGCGTTATTATCCATCGGTCGCTCTCAATTTTTCTCTCAAGGATCTTTATAGGACTATGTTGAGAGGTGGAAACTCTAGTGAAGTTGGTAATTTTTGGTCTGGTCCATCGGCTAATTTTGTGGCTGGCGCTGCTGCTGGTTGCACCACGCTGATTCTAATATATCCTCTCGACATTGCACACACCCGACTCGCTGCTGACGTCGGAAGAACTGGCGATCGTCAGTTTCGAGGCATCTACCACTTCCTCAAGACGATACACAAAAAGGATGGAATTCGAGGAATTTACAGGGGCCTTCCTGCCTCTCTACAAGGGATGGTCATCCACCGAGGCCTCTACTTCGGAGGTTTCGATACCATAAAAGAGATCTTGTCAGAAAATTACAAAACTGACTTGGCTCTGTGGAAGCGATGGATTGTGGCTCAGGGAGTTACAACTTCTGCCGGTTTGCTATCCTACCCTCTGGACACGGTTAGAAGGCGAATGATGATGCAATCTGGTTTGGAAGGGTCTATGTACCGTAGTACACTTGACTGCTGGAGGAAGATATATCGGACTGGAGGGGTGGCTTCATTTTATCGTGGGGCCGTCTCGAACGTATTTAGGAGCACGGGGGCGGCTGCGATTCTGGTTTTATACGACGAGATAAAGAAGTTTATGAAGTGGGATGGATTTTGA 987 47.82 MSKDDDDPRKDELASRLGSSGSQSPRWLTNFHRDLMAGAVMGGVVHTIVAPIERSKLLLQTQESNLAIVGVGRKKFKGMFDCIARTVREEGILSLWRGNGSSVLRYYPSVALNFSLKDLYRTMLRGGNSSEVGNFWSGPSANFVAGAAAGCTTLILIYPLDIAHTRLAADVGRTGDRQFRGIYHFLKTIHKKDGIRGIYRGLPASLQGMVIHRGLYFGGFDTIKEILSENYKTDLALWKRWIVAQGVTTSAGLLSYPLDTVRRRMMMQSGLEGSMYRSTLDCWRKIYRTGGVASFYRGAVSNVFRSTGAAAILVLYDEIKKFMKWDGF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33257992 33260328 + Bda032909 Bda01g00625 625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00625 328 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 26 327 - -
Bda01g00625 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 137 226 IPR018108 -
Bda01g00625 328 MobiDBLite consensus disorder prediction 1 25 - -
Bda01g00625 328 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Bda01g00625 328 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Bda01g00625 328 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Bda01g00625 328 PRINTS Mitochondrial carrier protein signature 98 118 IPR002067 GO:0055085
Bda01g00625 328 PRINTS Mitochondrial carrier protein signature 152 170 IPR002067 GO:0055085
Bda01g00625 328 PRINTS Mitochondrial carrier protein signature 244 266 IPR002067 GO:0055085
Bda01g00625 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 123 IPR018108 -
Bda01g00625 328 SUPERFAMILY Mitochondrial carrier 30 318 IPR023395 -
Bda01g00625 328 Gene3D Mitochondrial carrier domain 33 326 IPR023395 -
Bda01g00625 328 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 26 327 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bda01g00625 328 Pfam Mitochondrial carrier protein 136 230 IPR018108 -
Bda01g00625 328 Pfam Mitochondrial carrier protein 30 125 IPR018108 -
Bda01g00625 328 Pfam Mitochondrial carrier protein 236 324 IPR018108 -
Bda01g00625 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 239 322 IPR018108 -
Bda01g00625 328 PRINTS Adenine nucleotide translocator signature 109 121 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bda01g00625 328 PRINTS Adenine nucleotide translocator signature 76 97 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bda01g00625 328 PRINTS Adenine nucleotide translocator signature 137 150 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bda01g00625 328 PRINTS Adenine nucleotide translocator signature 31 43 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Bda01g00625 328 PRINTS Adenine nucleotide translocator signature 240 256 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00625 K05863 SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 - zju:107420065 528.094
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00625 Bda01g01046 CCT
Bda01g01046 Bda01g00625 ECH
Bda01g00625 Bda01g01046 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00625 Bda-Chr1:33257992 Bda10g00725 Bda-Chr10:41677475 1.58E-66 dispersed
Bda01g00625 Bda-Chr1:33257992 Bda03g00141 Bda-Chr3:1211400 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g83 . . Bda01g00625 . . . . . . . . . . . Sed08g1775 . . Bhi04g00529 Tan02g1620 Cmetu03g0019 . Hepe08g1401 . Lcy13g2193 . . . . . . . . . . . . . . . . . Bda01g01046 . . . Bma01g00919 Bma02g00351 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01587 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007060 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00625 Bda_Chr01 FPKM 26.980143 29.613331 120.408127 123.820389 22.475008 21.401651 21.962477 65.454407 65.861023