Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00627 ATGGGTGCTTCAGGAAAATGGGTTAAATCTCTTATGGGTTTCAGAAAGCCAGACAAGGAAGAACAAGAAAAGCAGTGTGGTAAGAGTACGAAATGGAGGCTATGGAGAAACCCATCAAGTGATTCAGGCTCTTCTTGGAAAGGCTTCAAAGGAGGTCGTAGAGCAGCGTCTGAGGGCTCAAATTCTCCACGAGCAGCTGATGCTTTTACAGCGGCCCGGGCTGCAGTACTTCGAGCTCCTCCTAAAGATTTTAAGGTAGTGAGGCAAGAATGGGCGGCTATTCGAATCCAAACTGCCTTTCGTGGTTTCCTGGCAAGACGCGCGTTGAGGGCGTTGAAAGGAGTGGTGAGGCTTCAGGCTCTGGTTCGTGGTCGGCTGGTGAGAAAGCAAGCGGCCGTGACGCTGAGATGCATGCAAGCCCTTGTTCGAGTCCAGGCTCGAGTGAGGGCTCGTCGAGTAAGAATGTCTACGAAGGGTCAAGCCGTTCAACAAATAATAACCGAAAATCGAACGAAGGCCGATCCCTTGAAACAGGCCGAGCAATGGAAGTCAACTCCCTCTGCCATTTCTAGAACTAATGCCTCGTTGTCGTCTGCTAAGAATCAAGAGTTTGATAAGAACAGCTGGGGATGGAGCTGGTTAGAGAGATGGATGGCTGCCAAGCCTTGGGAAACCAGGCTGATGGAACAACCTCAGGATGATTCACTACCTTCGAAGACCTTCATCGATTCTTCTTCCGGTAAACAGTCGAAAGAGGTTGAATCTTCTTGCTACGTAAAAGTCAGAAAAAACAACATTTCTACTCGAATTTCTGCTAAACCTCCTCAAATAATCCAAGTTCATCGGTCATCGTCGAGCCCGAGTTCTGATTTTCGATATGACGAGAGCTCAGCTTCGTCCTCGTTTTGCACCTCCATAACTCCGGCTTCCTGCAACACTTTAAAGACTAGTGAAAGAACAGAAGACAGCTCGAGAAATCATCCGAGTTACATGAACTTGACTGAATCAACAAAAGCGAAACAGAAAAGAGGTGGTTATTCGCCTCGTAGAAATCAAATGCAATCGAGGGACGAGTTCATCAACAGTTCGGCAGATTTCTCAAATGAGGATTCCAAAAGTAGTGCTGGCTCTGACCCTTCTGTCAATTTATTCAAGCCACTGGTATTTCCGAATCGATCTGGCAAGAGTGCCATGAAAGCAAGATGA 1206 47.35 MGASGKWVKSLMGFRKPDKEEQEKQCGKSTKWRLWRNPSSDSGSSWKGFKGGRRAASEGSNSPRAADAFTAARAAVLRAPPKDFKVVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSTKGQAVQQIITENRTKADPLKQAEQWKSTPSAISRTNASLSSAKNQEFDKNSWGWSWLERWMAAKPWETRLMEQPQDDSLPSKTFIDSSSGKQSKEVESSCYVKVRKNNISTRISAKPPQIIQVHRSSSSPSSDFRYDESSASSSFCTSITPASCNTLKTSERTEDSSRNHPSYMNLTESTKAKQKRGGYSPRRNQMQSRDEFINSSADFSNEDSKSSAGSDPSVNLFKPLVFPNRSGKSAMKAR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33266195 33268002 - Bda002648.1 Bda01g00627 627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00627 401 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Bda01g00627 401 SMART iq_5 111 132 IPR000048 GO:0005515
Bda01g00627 401 SMART iq_5 88 110 IPR000048 GO:0005515
Bda01g00627 401 MobiDBLite consensus disorder prediction 231 248 - -
Bda01g00627 401 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 175 400 - -
Bda01g00627 401 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 166 - -
Bda01g00627 401 MobiDBLite consensus disorder prediction 32 46 - -
Bda01g00627 401 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Bda01g00627 401 PANTHER IQ-DOMAIN 5-RELATED 175 400 - -
Bda01g00627 401 Gene3D - 90 131 - -
Bda01g00627 401 PANTHER IQ-DOMAIN 5-RELATED 1 166 - -
Bda01g00627 401 MobiDBLite consensus disorder prediction 1 63 - -
Bda01g00627 401 MobiDBLite consensus disorder prediction 314 401 - -
Bda01g00627 401 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Bda01g00627 401 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Bda01g00627 401 MobiDBLite consensus disorder prediction 12 30 - -
Bda01g00627 401 MobiDBLite consensus disorder prediction 326 380 - -
Bda01g00627 401 MobiDBLite consensus disorder prediction 229 248 - -
Bda01g00627 401 MobiDBLite consensus disorder prediction 270 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00627 - - - qsu:112015613 466.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00627 Bda-Chr1:33266195 Bda01g01331 Bda-Chr1:48956185 3.42E-42 dispersed
Bda01g00627 Bda-Chr1:33266195 Bda04g00916 Bda-Chr4:58942813 5.97E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g85 Blo01g01460 Blo12g01017 Bda01g00627 . Bpe02g01543 . . Bma01g02209 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0275 . . . . . . . . . . . . . . . . . Car01g01342 . . Cpe02g00266 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00176 . 1 458 IQD Protein Family AT3G52290 53.3 6.3e-95 344.7
Bda10g00517 . 6 248 IQD Protein Family AT3G52290 59.7 2.2e-55 213.4
Bda09g00275 . 1 418 IQD Protein Family AT3G22190 55.1 3.6e-95 345.5
Bda01g00627 . 1 395 IQD Protein Family AT2G26180 53.0 1.1e-91 334.0
Bda02g00019 . 1 274 IQD Protein Family AT2G33990 51.1 2.4e-60 229.2
Bda05g00781 . 2 162 IQD Protein Family AT2G33990 50.9 2.7e-40 162.5
Bda05g00781 . 1 173 IQD Protein Family AT3G15050 56.1 3.2e-49 192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00627 Bda_Chr01 FPKM 14.217669 16.614225 11.520263 12.323648 4.505828 4.16792 5.479718 0.456756 0.275576