Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00641 ATGGCGGCTACTTTGGTCCGTCTCTCCATCTCCTCTCCCCCCAAGCTATCCTTCTTTGACTGCTCCGCAGACAACGGCCGCCTCTTTGACTTCCGGCATTGTTTGCCCAATCGGCAACTTCGTCACTGCTCTTTCTCCTTCCCTCGACAGCACCACTGTTATCGGCGACTGAACAAGCCTACTGTCCGCATTTCTAATGCCCTCGAGGTTCGACCTTCGACGCAAAATGCAGCGTTTCAACCAGAACGGCCGGAAGAGCTGTCGGTCCTCCTCGACGTTTCGGGAATGATGTGCGGTGCTTGTGTTTCTCGAGTCAAATCCGTTCTTTCTTCCGACGATCGGGTTGATTCTGTCGTAGTCAACATGTTGACCGAGACGGCGGCAATTCGTTTGAAGCCGCAGATGGTCGCGGATTCGGCCACGGAAGTGGCGGGAAGACTTGCCCGAAAATTGACGGAGTGTGGCTTCCCGACGAATCAGAGGGTTTCCGGGATGGGAGTATCGGATAATGTGAAGAAATGGAAAGAGATGGTGAAGAAGAAGGAGAGTATGCTCGAAGAGAGCCGGAATCGGGTGGCTTTTGCTTGGACTCTGGTAGCATTATGTTGTGCTTCGCATGCTTCACACATATTGCATTCTCTTGGTATTCACATTGCACATGGAACATCGTGGGATATACGTCAAAACTCGTATCTAAAAGGCAGCTTGGCTTTGGGAGCTCTGTTAGGACCGGGACGAGACTTGCTGTTTGATGGTCTGAGGGCATTTAAGAAGGGATCGCCAAATATGAATTCGCTTGTAGGCTTTGGTGCTGCTGCTGCTTTTACGATCAGCATGGTCTCACTTCTTAACCCTGGGCTAGCATGGGATGCCTCCTTCTTTGATGAACCGGTCATGCTTCTTGGTTTTGTGCTCCTTGGACGTTCACTGGAAGAAAAGGCAAGGATCAGGGCATCTAGTGACATGAACGAACTTCTGTCATTATTATCCACTCGCTCACGACTTGTAATTGCCTCCCCAGAAAGTGATTCCTCCACCGAGACTGTCCTCTGCCCTGATGCAATTTGCATTGGTGTTCAAACTGATGATATACGAGTTGGAGATTCAATTTTGGTTTTACCAGGAGAGACCATACCTGTGGACGGAAAAGTTCTTGCGGGAAGAAGCATAGTGGACGAATCCATGCTCACAGGGGAATCTCTACCTGTATTTAAGGACAAAGGCTTTATGGTCTCTGCTGGAACAATAAATTGGGATGGTCCTTTGAGAATTGAAGCCTCTTCAACTGGCTCTAATTCAACTATATCGAAGATTATTCGCATGGTTGAGGATGCTCAAGGTCGCGAAGCACCAATTCAAAGACTTGCAGATTCTATAGCTGGACCGTTTGTGTACACTGTACTAACTCTCTCAGCAGCAACGTTTGCCTTTTGGTACTACTTTGGGACCCATATTTTTCCAGATGTTTTGATGAATGATATTGCTGGACCAGATGGAGATCCATTACTTTTAAGCTTGAAACTTGCGGTGGATGTCTTGGTTGTTTCTTGCCCATGTGCACTTGGACTTGCCACTCCCACGGCTATCCTTGTTGGCACTTCCCTAGGGGCAAGACAAGGACTTCTTATAAGAGGAGGAGATGTATTAGAGCGTTTGGCGGGCATTAATTGTGTTGCTCTTGACAAGACAGGGACTCTTACTGAAGGAAAGCCATCTGTTTCTGCTGTTGCTTCCTATGCCTATGCGGAATCAGAGATTCTCAAAATTGCTTCTGCAGTGGAGAAGACTGCATCACATCCAATCGCAAAAGCCATAGTAGATAAAGCAGAGTTGTTGACTTTGACTTTTCCAATTACCAAAGGGCAAATAGTGGAACCTGGTTTTGGAACTTTGGCAGAAGTAGAAGGGAAATTGGTTGCAGTTGGTTCTTTAGAATGGGTGCATGAAAGGTTCCAAGAAAAGGCAACGCTTTCTGATCTTAAAAAACTAGATCATAATGTGCATCAGTCATTAGAAGGATCGACCTTATCAAATAATTCGAAAACAGTTGTTTATGTTGGACGAGAAGGAGAAGGAATTATCGGTGCTATTGTGATTTGTGATAATTTGCGCCAGGATGCGGCATCTACTGTCACAAGGCTCCAGCAGAAGGGTATTAGAACTATTCTCTTATCCGGAGACAGGGAAGAGGCAGTTGCAAATATAGCGGAGAAGATTGGACTACACAAAGAATATGTTGCATCCTCGACTCCACAGCTAAAGTCTGAAGTTATTTCCTCTCTTAAATTGGCAGGACATCAAGTTGCCATGGTAGGTGATGGCATCAACGATGCACCATCTTTAGCTCTTGCAGATGTTGGAATTGCCTTGCAGATTGAAGCACAGGAGAACGCTGCTTCCAATGCAGCGTCAATTTTGCTTCTTGGGAACAGATTATCACAGGTGGTAGATGCTTTGGAACTTGCGCAAGCAACAATGGCTAAAGTGTACCAGAATCTATCATGGGCAATAGCCTACAATATGATTGCCATTCCAATTGCTGCCGGAGTACTACTTCCCCAGCTTGATTTTGCCATGACGCCATCTCTTTCTGGCGGACTTATGGCTTTGAGCTCAATTTTTGTCGTCTCCAACTCACTACTTCTCCAGCTTCATAGATTTGAGAGGAGCAAGTAG 2676 46.41 MAATLVRLSISSPPKLSFFDCSADNGRLFDFRHCLPNRQLRHCSFSFPRQHHCYRRLNKPTVRISNALEVRPSTQNAAFQPERPEELSVLLDVSGMMCGACVSRVKSVLSSDDRVDSVVVNMLTETAAIRLKPQMVADSATEVAGRLARKLTECGFPTNQRVSGMGVSDNVKKWKEMVKKKESMLEESRNRVAFAWTLVALCCASHASHILHSLGIHIAHGTSWDIRQNSYLKGSLALGALLGPGRDLLFDGLRAFKKGSPNMNSLVGFGAAAAFTISMVSLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIRASSDMNELLSLLSTRSRLVIASPESDSSTETVLCPDAICIGVQTDDIRVGDSILVLPGETIPVDGKVLAGRSIVDESMLTGESLPVFKDKGFMVSAGTINWDGPLRIEASSTGSNSTISKIIRMVEDAQGREAPIQRLADSIAGPFVYTVLTLSAATFAFWYYFGTHIFPDVLMNDIAGPDGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLGARQGLLIRGGDVLERLAGINCVALDKTGTLTEGKPSVSAVASYAYAESEILKIASAVEKTASHPIAKAIVDKAELLTLTFPITKGQIVEPGFGTLAEVEGKLVAVGSLEWVHERFQEKATLSDLKKLDHNVHQSLEGSTLSNNSKTVVYVGREGEGIIGAIVICDNLRQDAASTVTRLQQKGIRTILLSGDREEAVANIAEKIGLHKEYVASSTPQLKSEVISSLKLAGHQVAMVGDGINDAPSLALADVGIALQIEAQENAASNAASILLLGNRLSQVVDALELAQATMAKVYQNLSWAIAYNMIAIPIAAGVLLPQLDFAMTPSLSGGLMALSSIFVVSNSLLLQLHRFERSK 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33430464 33449310 + Bda002667.1 Bda01g00641 641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00641 891 Gene3D - 314 446 - -
Bda01g00641 891 Pfam Heavy-metal-associated domain 91 156 IPR006121 GO:0046872
Bda01g00641 891 CDD HMA 91 157 IPR006121 GO:0046872
Bda01g00641 891 Pfam E1-E2 ATPase 358 539 - -
Bda01g00641 891 ProSiteProfiles Heavy-metal-associated domain profile. 88 160 IPR006121 GO:0046872
Bda01g00641 891 SUPERFAMILY HAD-like 558 879 IPR036412 -
Bda01g00641 891 SUPERFAMILY Calcium ATPase, transduction domain A 353 442 IPR008250 -
Bda01g00641 891 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 263 882 IPR027256 GO:0006812|GO:0016021|GO:0019829
Bda01g00641 891 Coils Coil 171 191 - -
Bda01g00641 891 Gene3D - 83 162 - -
Bda01g00641 891 Pfam haloacid dehalogenase-like hydrolase 555 785 - -
Bda01g00641 891 Gene3D - 570 703 IPR023299 GO:0000166
Bda01g00641 891 CDD P-type_ATPase_HM 191 881 - -
Bda01g00641 891 Gene3D - 550 822 IPR023214 -
Bda01g00641 891 SFLD C1.7: P-type atpase like 542 824 - -
Bda01g00641 891 ProSitePatterns E1-E2 ATPases phosphorylation site. 561 567 IPR018303 -
Bda01g00641 891 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 561 650 IPR023299 GO:0000166
Bda01g00641 891 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Bda01g00641 891 PRINTS P-type cation-transporting ATPase superfamily signature 392 406 - -
Bda01g00641 891 PRINTS P-type cation-transporting ATPase superfamily signature 559 573 - -
Bda01g00641 891 PRINTS P-type cation-transporting ATPase superfamily signature 771 790 - -
Bda01g00641 891 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 345 863 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda01g00641 891 SFLD p-type atpase 542 824 IPR044492 -
Bda01g00641 891 PANTHER ATP7, ISOFORM B 53 885 - -
Bda01g00641 891 SUPERFAMILY HMA, heavy metal-associated domain 85 137 IPR036163 GO:0046872
Bda01g00641 891 SUPERFAMILY Calcium ATPase, transmembrane domain M 295 553 IPR023298 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00641 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - qsu:111997859 1246.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00641 Bda-Chr1:33430464 Bda08g00694 Bda-Chr8:7415801 0 dispersed
Bda08g00721 Bda-Chr8:8109263 Bda01g00641 Bda-Chr1:33430464 4.13E-10 dispersed
Bda01g00641 Bda-Chr1:33430464 Bda09g00789 Bda-Chr9:14748283 1.12E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00641 Bda_Chr01 FPKM 18.973145 21.045872 18.924389 18.951221 19.232441 20.969782 19.392578 24.26338 24.536198