Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00642 ATGGAGTGTTTTAAGGACGTGGACAATGTCCTATACGACTGGACGGACTCACCCTCTTCAGATTATTGTGTTTGGAGAGGTATTGGCTGCGACAATGTCACTTTCAGTGTAGTTTCACTCAATCTCTCAGGTTTAAACCTCGATGGAGAAATTTCACCTGCAATTGGAAAACTTAGAAGCCTGATAACCATTGACTTGAGGGGAAATCATCTTTCCGGCCAAATTCCCGACGAGATTGGCGACTCCTCTTCTTTGAGAAATCTGGACTTATCATACAATGAAATATATGGAGATATACCATTTTCAATCTCAAAACTGAAGCAACTAGAAATGATAGTTTTGAAAAGCAACCGCTTGAATGGACCAATTCCTTCTACTTTATCTCAAATTCCAAATTTGAAGATATTAGATCTTGCACAGAATAATCTCAGCGGCGAAATTCCGAGGCTTCTGTACTGGAATGAAGTTTTGCAGTATCTTGGATTACGGGGAAACAATTTGGTCGGTACTCTCTCTCCGGATATTTGCCAACTTACAGGATTGTGGTACTTTGATGTGAGAAACAACAGTTTGACTGGAAGCATTCCACAAAGCATAGGGAATTGCACTGCCTTCCAGGTCTTAGACCTATCCTATAATCGGTTGACCGGAGAGATTCCGTTCAATATTGGTTTCCTACAAGTTGCCACTTTGTCACTACAAGCAAATCAACTTTCTGGTCAAATTCCAGCCGTCATCGGGTTGATGCAGGCTCTTGCAGTGTTAGATCTGAGCTGCAACAAGTTAAGTGGTTTGATTCCTCCTATCTTGGGAAACTTGACTTACACGGAGAAATTGTACTTGCATGGCAACATGCTTACTGGGTCCATTCCTTCAGAGCTTGGGAATATGACAAAGCTTCATTATCTGGAACTGAACGACAATCATCTGACGGGATGTATTCCGCCAGAACTCGGGAAGCTCACTGATTTGTTTGATATAAATGTGGCGAACAATAATCTCGAAGGACCTATACCAGACAACCTCAGTTCGTGCACAAATCTGAACAGTCTAAATGTACATGGAAATAAACTGAATGGTTCGATTCCGCCTGCTCTCCAAAGGCTGGAGAGCTTGACTTATCTAAATCTCTCGTCAAACAATCTTCAGGGCTCCATTCCAATCGAGCTGTCTCGGATTGGTAACTTGGACACTTTGGATTTATCGAATAACAAAATTAGTGGGTCAATTCCTTCTTCCCTTGGCGATCTAGAACACCTCCTTAAGTTGAATTTAAGTGGAAATGATTTAACGGGATTCATTCCTGCGGAGTTTGGTAATCTGAGAAGTGTTATGATGATAGATCTCTCTGAAAATCATCTCTCGGGCCCGATTCCTCAAGAATTTAGTCAGCTTCAGAATATGTTGTCCTTGAGACTGGAAAGCAACAATCTATCTGGGGATGTGACGTTTCTAATTAACTGCCTGAGTCTAACAGAATTGAACGTATCTTATAATAACTTGGCTGGCGTTATTCCGACTAGCAATAACTTCTCGAGATTCCCGTTTGACAGTTTTGTTGGAAATCCGGGTCTTTGCGGATCTTGGCATAACTACCAATGCCATGAGTCTCAATCAATGGAGAGAGTCACAATATCTAAAGCGGCAATCATCGGCATTGCTCTTGGTGGTCTCGTGATTCTTCTCATGATCCTTTTAGCTGCATTTCGACCAAACAATGCAATTACATTTCCCGATGGAGCAGTCAAAAAACCAGTTGTAGTTAATTTTTCAACTCCAAAGCTGGTGATTCTGCATATGAATATGGCACTTCATGTGTATGAAGACATTATGAGAATGACCGAAAACTTGAGCGAGAAGTATATAATCGGGTATGGAGCTTCAAGTACTGTCTACAAATGCGTTCTTAAAAACTGCAAACCGGTGGCCATCAAGAGACTATACTCTCACTATCCTCAGAGCATGAAGGAATTCCAAACCGAGCTCGAGACAGTAGGAAGCATCAAGCACAGAAATCTCGTCAGCCTCCAGGGCTATTCCTTCTCCCCCTACGGCAACCTTCTCTTCTACGACTACATGGAGAATGGCAGTCTTTGGGATCTTCTTCATGGGCCGACGAAAAAGAAAAAACTTGGTTGGGACACTCGGCTGAAAATTGCACTCGGATCGGCTCAAGGGCTTTCGTATCTACACCATGATTGCAGTCCACGCATCATCCACAGGGATGTCAAATCGTCGAATATTCTTCTGGACAAGGATTTTGAGCCTCATCTTACGGATTTTGGCATTGCCAAGATTTTATGCACATCAAAGACTTATACTTCTACTTACATAATGGGAACGATTGGATACATCGACCCTGAGTATGCACGAACCTCTCGACTAACGGAAAAATCCGATGTTTACAGCTACGGAATTGTTTTGCTCGAACTGCTGACTGGAAGAAAAGCTGTTGACAATGAGTCAAACCTCCATCATCTGATTTTATCGAAGACAGCCAACAATACTGTCATGGAAGCAGTCGATCCCGAGATTACTGCTACATGTAAGGATCTTGGAGCAGTGAAGAAAGTTTTTCAACTTGCTCTTCTATGCACAAAGAGACAGCCGTTCGACCGACCTTCAATGCATGAAGTCACCCGTGTTCTTGGAAGTCTCGAGCCAGCCTTGGCCCTGCCAAAAAACGGAGGGTCTGTGCCAACTTCAAAAGTGCCTTGCTACGTCGACAAGTATGCGAATTTGAAAACGCCACACATGGTTCAATGCCCGTCGAATACGTCGGACGCTCAGCTATTCCTCAAATTTGGAGAGGTAATATCTCAGAACAGTGAGGGTTGA 2838 42.95 MECFKDVDNVLYDWTDSPSSDYCVWRGIGCDNVTFSVVSLNLSGLNLDGEISPAIGKLRSLITIDLRGNHLSGQIPDEIGDSSSLRNLDLSYNEIYGDIPFSISKLKQLEMIVLKSNRLNGPIPSTLSQIPNLKILDLAQNNLSGEIPRLLYWNEVLQYLGLRGNNLVGTLSPDICQLTGLWYFDVRNNSLTGSIPQSIGNCTAFQVLDLSYNRLTGEIPFNIGFLQVATLSLQANQLSGQIPAVIGLMQALAVLDLSCNKLSGLIPPILGNLTYTEKLYLHGNMLTGSIPSELGNMTKLHYLELNDNHLTGCIPPELGKLTDLFDINVANNNLEGPIPDNLSSCTNLNSLNVHGNKLNGSIPPALQRLESLTYLNLSSNNLQGSIPIELSRIGNLDTLDLSNNKISGSIPSSLGDLEHLLKLNLSGNDLTGFIPAEFGNLRSVMMIDLSENHLSGPIPQEFSQLQNMLSLRLESNNLSGDVTFLINCLSLTELNVSYNNLAGVIPTSNNFSRFPFDSFVGNPGLCGSWHNYQCHESQSMERVTISKAAIIGIALGGLVILLMILLAAFRPNNAITFPDGAVKKPVVVNFSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQSMKEFQTELETVGSIKHRNLVSLQGYSFSPYGNLLFYDYMENGSLWDLLHGPTKKKKLGWDTRLKIALGSAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKILCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANNTVMEAVDPEITATCKDLGAVKKVFQLALLCTKRQPFDRPSMHEVTRVLGSLEPALALPKNGGSVPTSKVPCYVDKYANLKTPHMVQCPSNTSDAQLFLKFGEVISQNSEG 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33452813 33458410 + Bda002668.1 Bda01g00642 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00642 945 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 3 932 - -
Bda01g00642 945 Gene3D Ribonuclease Inhibitor 154 226 IPR032675 -
Bda01g00642 945 ProSiteProfiles Leucine-rich repeat profile. 132 154 IPR001611 GO:0005515
Bda01g00642 945 ProSiteProfiles Leucine-rich repeat profile. 84 107 IPR001611 GO:0005515
Bda01g00642 945 ProSiteProfiles Leucine-rich repeat profile. 395 418 IPR001611 GO:0005515
Bda01g00642 945 Gene3D Transferase(Phosphotransferase) domain 1 693 891 - -
Bda01g00642 945 Pfam Leucine Rich repeat 488 503 IPR001611 GO:0005515
Bda01g00642 945 Pfam Leucine Rich repeat 371 384 IPR001611 GO:0005515
Bda01g00642 945 Gene3D Ribonuclease Inhibitor 227 313 IPR032675 -
Bda01g00642 945 Gene3D Ribonuclease Inhibitor 411 536 IPR032675 -
Bda01g00642 945 SUPERFAMILY L domain-like 10 226 - -
Bda01g00642 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Bda01g00642 945 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Bda01g00642 945 Pfam Protein kinase domain 620 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00642 945 SMART serkin_6 617 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g00642 945 SUPERFAMILY Protein kinase-like (PK-like) 595 883 IPR011009 -
Bda01g00642 945 SUPERFAMILY RNI-like 171 505 - -
Bda01g00642 945 Gene3D Phosphorylase Kinase; domain 1 586 692 - -
Bda01g00642 945 PRINTS Leucine-rich repeat signature 252 265 - -
Bda01g00642 945 PRINTS Leucine-rich repeat signature 369 382 - -
Bda01g00642 945 SMART LRR_typ_2 58 82 IPR003591 -
Bda01g00642 945 SMART LRR_typ_2 297 321 IPR003591 -
Bda01g00642 945 SMART LRR_typ_2 417 440 IPR003591 -
Bda01g00642 945 SMART LRR_typ_2 249 272 IPR003591 -
Bda01g00642 945 SMART LRR_typ_2 369 393 IPR003591 -
Bda01g00642 945 SMART LRR_typ_2 178 202 IPR003591 -
Bda01g00642 945 SMART LRR_typ_2 130 154 IPR003591 -
Bda01g00642 945 CDD STKc_IRAK 623 886 - -
Bda01g00642 945 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 932 - -
Bda01g00642 945 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515
Bda01g00642 945 Pfam Leucine rich repeat 251 310 IPR001611 GO:0005515
Bda01g00642 945 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Bda01g00642 945 Gene3D Ribonuclease Inhibitor 2 153 IPR032675 -
Bda01g00642 945 Gene3D Ribonuclease Inhibitor 314 410 IPR032675 -
Bda01g00642 945 ProSiteProfiles Protein kinase domain profile. 617 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00642 Bda-Chr1:33452813 Bda05g00016 Bda-Chr5:1222436 0 dispersed
Bda04g00579 Bda-Chr4:54491943 Bda01g00642 Bda-Chr1:33452813 1.43E-19 dispersed
Bda12g00034 Bda-Chr12:212162 Bda01g00642 Bda-Chr1:33452813 1.17E-16 dispersed
Bda05g00774 Bda-Chr5:56198663 Bda01g00642 Bda-Chr1:33452813 8.05E-07 transposed
Bda07g01320 Bda-Chr7:16013117 Bda01g00642 Bda-Chr1:33452813 2.51E-13 transposed
Bda14g01371 Bda-Chr14:16076482 Bda01g00642 Bda-Chr1:33452813 2.88E-19 transposed
Bda01g00642 Bda-Chr1:33452813 Bda13g01576 Bda-Chr13:39253024 2.39E-36 wgd
Bda01g00642 Bda-Chr1:33452813 Bda03g00124 Bda-Chr3:1080363 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69423 PF00069 Pkinase 6.20E-44 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00642 K20718 - rcu:8258591 1580.07