Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00646 ATGAGAAGCGTTTCGTGTGGCAGGAATTCGCTGTTGGCGCTGTTCTCTTGGTTGCAGATTCGGTTTATGACCTCCGGGAAACGGGTCCAGGATCGAAGCGCCCTGAAGAGAGTACTCGATCTCGAAGTAGCGACGGAGAAATGGAAGATCGCATCCAAAGCGATTTTCTTGATTGAAACGCTGAAGGAAGAGCCGGAGATGATAATTCCAGTCAGGAACTTGGAGCAATACCGGCGGCAAATTAATCTTCCGAAGCCTCACAGGGTTTCCGACTTCATTCGAAAATCTCCGAAGTTGTTTGAGTTGTACAAGGATCAGAGAGGGGTGCTTTGGTGCGGTATGACTAAAGGAGCCGAAGAATTGGTTGAAGAGGAGGCGAAGATAATCGAGGAGCACGCCGACAAAGCTGCGGAGCATGTGACCAGGTTTCTGATGATGTCGGTAGATAAACGTCTTCCGGTAGCGAAAATTGCTCATTTCAGGAAAGATTTTGGGCTTCCAATGGATTTCAGAACGAAATGGGTGCACAATTATCCTCAACTTTTTAGGGTTTCAAAGTCTGATGATGAAATTGAATATTTGGAGCTTGTTTCTTGGAATCCTGCCTGGGCTATAACAGAGTTGGAGAAGAAGGTGATGAAACTGACTGAAAACACTCTACCGCATGCTCATACTCCTGGTTTTCTCTCCCTCTCATTCCCACTAAAATTTCCTCCCAATTACAAGAAGGTGTACAGATATGGAGGAAAAATTGAGCACTTTCAGAAGAGGACCTATCTCTCTCCCTACGCCGATGCTCGAGAACTGAAAGCTGGGTCGTTAGAGTTTGATAAGAGGGCAGTTGCAGTAATGCACGAGCTGCTAAGCTTCACCATTGAAAAGAGACTGGTAACTGACCATCTGACCCACTTTCGTCAGGAGCTCGTTATGCCTCAAAGGCTAATGAGACTTCTTTTGAAACATTTTGGCATCTTCTACGTTTCAGAGAGGGGAAAGAGGTTTAGTGTTTTCTTAACGGAAGCTTATGAAGGTTCAGAGCTTATCGAGAAATGTCCACTGGTTCTTTGGAAGGAAAAGCTACAGAGGCTCATTGGTTATAGAGGGAAGAAGAAGAAGATTGAAAGTTTCAATGATATGTTAGAATTGGAAGATAACAGGGTAGAAGAGGATGATTCTGATAGTGACGGTGTTCATATTGATCTTCGGGAAGATGATACAGTTGGCGTGTTCGACGATTCATCTGTTACCAATAGTGGCGAGACAGAGATCGGAGATTTTTTCAAGGCATACGAGGATTCTTGA 1302 44.7 MRSVSCGRNSLLALFSWLQIRFMTSGKRVQDRSALKRVLDLEVATEKWKIASKAIFLIETLKEEPEMIIPVRNLEQYRRQINLPKPHRVSDFIRKSPKLFELYKDQRGVLWCGMTKGAEELVEEEAKIIEEHADKAAEHVTRFLMMSVDKRLPVAKIAHFRKDFGLPMDFRTKWVHNYPQLFRVSKSDDEIEYLELVSWNPAWAITELEKKVMKLTENTLPHAHTPGFLSLSFPLKFPPNYKKVYRYGGKIEHFQKRTYLSPYADARELKAGSLEFDKRAVAVMHELLSFTIEKRLVTDHLTHFRQELVMPQRLMRLLLKHFGIFYVSERGKRFSVFLTEAYEGSELIEKCPLVLWKEKLQRLIGYRGKKKKIESFNDMLELEDNRVEEDDSDSDGVHIDLREDDTVGVFDDSSVTNSGETEIGDFFKAYEDS 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33481986 33483287 + Bda002674.1 Bda01g00646 646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00646 433 Pfam Plant organelle RNA recognition domain 36 367 IPR021099 GO:0003723
Bda01g00646 433 PANTHER EXPRESSED PROTEIN 14 427 - -
Bda01g00646 433 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 14 427 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00646 - - - zju:107420084 620.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00646 Bda-Chr1:33481986 Bda08g00113 Bda-Chr8:973213 2.32E-52 dispersed
Bda13g00292 Bda-Chr13:3663462 Bda01g00646 Bda-Chr1:33481986 9.94E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g183 Blo01g01434 . Bda01g00646 . . Bpe02g00517 . Bma01g02187 . . . . Car09g00491 . . . Cpe06g00269 . . . . . . . . . . . . . . . . . . . . Chy04g00252 . . Blo18g00244 . . . . Bma01g00900 . . . Cmo09g00550 Cma09g00559 . . . . . . . . . . . . . . . . . . . . . . Cme04g00282
Vvi4g685 Blo01g01433 . Bda01g00646 . . Bpe02g00517 . . . . . . Car09g00329 . . . Cpe06g00269 . . . . . . . Cla05g01645 Cam05g1756 Cec05g1763 Cco05g1819 Clacu05g1745 Cmu05g1630 Cre05g1759 . . . . Lsi04g01371 . . . . . . . . . . . . . Cmo09g00381 Cma09g00379 . . . . . . . . . . . . . . . . . . . . . . Cme07g00161
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004384 1 3 3 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00646 Bda_Chr01 FPKM 39.378349 38.893089 48.791992 51.87627 43.329456 43.009243 40.132034 78.566147 73.227859