Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00649 ATGGTTTGCGAGTTGGAGAGCGACATCATGGAAGATATGGACATTGAGGACCTTCCCTCGATGTGGCCTGAAGATGTAGTGTCTAATGTCGGTAAGCAATTCAATGTAGAAAGGCCAAGAGGAGATCAAGATATGCTGGAAGAAGTTACCATAATAGAGGAGCCAACAATAGTGGATTTCAAACGCCTTTTGGAGTTGACCAACTACACTGAGAAAGGGTCTTCGCAATTGCAATATCTTGCGAAACAATGGGAATATAAGCAGGCAAATGCTGTTCGTCTTCTTAAAGAAGAACTTGACATTATGAACAAACAAAGGCAGGAATTTGAGCTCAAGGAATTGAAGATAGTTGAGGAGCATCTCTTTGAGGAAGAAAGATATGGTGATTATAAGCGTCCAATTTCTATTTTGGAAGAAGTTTATGACTTATGGCAAGATGTTCCTCAAAGAAAAAATGATTTTGTTTTTCAAAATAAGAGAGTTGAAATAGAGCCAGAGTATGATACCCTAACATATTGGAAGCAGAAGACAGTGAAGTTGGAGAAATTATTAGAAGCTAGTTTACAGCGAGAGCATATTTTAACAGAGAAGCTCCAGGAAAGTATAAAAAATATCGAGAAGCAGACATCACCAGTTGAGGAGTTATCCCAGATTTTGAAAAGAGCAGACAATTTTTTGCATTTCGTTCTTCAGAATGCTCCCGTTGTTATTGGTCATCAGGATAAAGAATTGCGATATCGTTTTATCTATAATCATTTTCCAAGTTTGGATGAGGAGGATATTATTGGAAAAACAGATGTTGAAATTTTTCATGGAGCCGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTTCTGGAAAAAAGAATACCTGCAAAGAGGGAAATTACTTTTGACACTCCATTATTTGGGTTAAAGACATTCTTGATATATGTGGAACCTGTCTTCAGTAAGGCCGGGGAGACAATTGGGATAAACTATATGGGAATGGATGTAACTGATCAGGTCAGGAAACGAGAAAAGATGGCAAAACTCAGAGAGGAGATAGCAGTGCAAAAGGCCAAGGAAACAGAACTAAACAAAACCATTCATATAACAGAGGAGACAATGAGGGCAAAGCAAATGCTGGCAACGATGTCTCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGTATGGCTGAGATTCTTGCCACTACAAAACTTGATCGGGAGCAGCGACAGCTTTTGGATGTTATGCTGTCTTCAGGGGATTTGGTGATTCAACTTATAAATGACATCTTGGATCTTTCGAAGGTTGAGTCAGGAGTTATGAAACTGGAAGATACAAAATTCCGACCTAGAGAGGTTGTGAAGCATGTCCTCCAGACAGCAGCTGCATCACTGCAGAAATGTTTACTCTTGGAAGGCCATGTAGCTGATGACGTTCCTGTGGAGGTCATTGGAGATGTTTTGAGGATTAGGCAAATTCTTACGAACTTGATAAGCAATGCAATCAAGTTTACTCATCAAGGAAAGGTTGGAATTAAGATTTATGTGGTACCAGATCAACTTTCTTGGAAAGGAGAAGAATGTCATCAGAGGTTTAATCCTCAGCATTCCACAGTTTTATCAACCGAATTGGAAGAAGAGAAATGTCCGTCAGTACCTCAGAATAGCTCAGATAGAAAAAATTATTTCCAAAAACAAGGGGATAGTCCTCAACAAAATCATTCGTTTTGCCCGGATATTAGAAGCACTGGTAACTGTGAACCTTTGGTGAATGGAAAAAGGGAGGAACATCACCAGGCACCCGAAACAACTGTGTGGATTCGCTGTGATGTTTACGACACAGGAATTGGAATACCAGAAAATGCATTACCTACACTTTTTAAAAAGTACATGCAAGTTAGTGCTGATCATGCCAGAAAGTACGGAGGGACGGGGCTGGGATTAGCAATAAGCAAACAACTGCCCCTAAGAACTTTTCTTAGCTTTATCGTTTCTTTATTATTTGGTCTTTCATTGTTGCAGGTTGAGCTGATCGGTGGTCGTTTGACAGTGTCTAGCCAAGAGCATCGTGGATCTACTTTTACATTTGTGTTACCATACAAGCTTTCAACCGCTGCCGACGCTACTGATGATTCTGATGAGATCGCAGATGTGACAAATTACGATGTGGCAAATAGTGATTCATCTGAAGGGTTTTTCCAATTTCAACCTGGCAGTTTTGGTTCGCTAACCTCTTCTAACGGACGTAGCAGAACTCAAAAGTTGTCGCATAACAACGGGTATGCGACGTCAAAAGAAAATGGATTACGATGGAGTTCTAATTCATTTCTCTCCAACGCAAGATCAAAAGAGATGCCTTTTCTTGAGGATGCCTGTTCAGTAGCTGATTCTACAACATTAGAGGAATCAAAAACTACACAAAATCATAACGAGAATTCAGTTTGTGGAGTGAGCCACTGTCAAGATAAGACAAATGATTCATCCTCCCTGAATGATTGTAATGATTCACCTCATAGCATGGGAAAAGAAAGAGAAGAGTTCATATCAAAAGGGACATTTGAACCCCAAGTAAATTCCAAGTGGAAGGAGAAATCTGATTCCAGATTTCAGTGCGTGAACAATGTCAATTCAGAAGTATCTCAATCAGCATTAAAACCTAGAATTCTTCTTGTGGAGGACAACAAGACCAATATAATGGTAACACAATCCATGATGAAGAAGTTGGGACATAGCATTGATGTTGTCACCAATGGAGCTGATGCAGTGCGAGCAGTTCAATGTTGTCACTACGATCTTGTTCTCATGGATGTGTGCATGCCGATTATGGATGGGCTCCAAGCTACACGATTAATTCGTTCTTTCGAAGAAGTAGGTAACTGGGATGCCGCAGAAAAGGCTGGAATCGAACCCGTGCAAGACCGGACTGTATCCAGTGGCAAGCGTATTCCCATAGTGGCTATGACAGCGAATGCGTTGGCTGAAAGTGCAGGAGAGTGCTTTGCAAATGGTATGGACTCTTTTGTTTCAAAGCCCGTCACTTTCCCACACTTGAAACAGTGCCTTGAACAATACTTAACGTGA 3072 40.49 MVCELESDIMEDMDIEDLPSMWPEDVVSNVGKQFNVERPRGDQDMLEEVTIIEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDIMNKQRQEFELKELKIVEEHLFEEERYGDYKRPISILEEVYDLWQDVPQRKNDFVFQNKRVEIEPEYDTLTYWKQKTVKLEKLLEASLQREHILTEKLQESIKNIEKQTSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLDEEDIIGKTDVEIFHGAGVKESQDFKREVLEKRIPAKREITFDTPLFGLKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILATTKLDREQRQLLDVMLSSGDLVIQLINDILDLSKVESGVMKLEDTKFRPREVVKHVLQTAAASLQKCLLLEGHVADDVPVEVIGDVLRIRQILTNLISNAIKFTHQGKVGIKIYVVPDQLSWKGEECHQRFNPQHSTVLSTELEEEKCPSVPQNSSDRKNYFQKQGDSPQQNHSFCPDIRSTGNCEPLVNGKREEHHQAPETTVWIRCDVYDTGIGIPENALPTLFKKYMQVSADHARKYGGTGLGLAISKQLPLRTFLSFIVSLLFGLSLLQVELIGGRLTVSSQEHRGSTFTFVLPYKLSTAADATDDSDEIADVTNYDVANSDSSEGFFQFQPGSFGSLTSSNGRSRTQKLSHNNGYATSKENGLRWSSNSFLSNARSKEMPFLEDACSVADSTTLEESKTTQNHNENSVCGVSHCQDKTNDSSSLNDCNDSPHSMGKEREEFISKGTFEPQVNSKWKEKSDSRFQCVNNVNSEVSQSALKPRILLVEDNKTNIMVTQSMMKKLGHSIDVVTNGADAVRAVQCCHYDLVLMDVCMPIMDGLQATRLIRSFEEVGNWDAAEKAGIEPVQDRTVSSGKRIPIVAMTANALAESAGECFANGMDSFVSKPVTFPHLKQCLEQYLT 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33503972 33510587 + Bda002677.1 Bda01g00649 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00649 1023 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 697 IPR003594 -
Bda01g00649 1023 SUPERFAMILY CheY-like 883 1022 IPR011006 -
Bda01g00649 1023 SMART REC_2 883 1018 IPR001789 GO:0000160
Bda01g00649 1023 MobiDBLite consensus disorder prediction 541 574 - -
Bda01g00649 1023 ProSiteProfiles Response regulatory domain profile. 884 1022 IPR001789 GO:0000160
Bda01g00649 1023 Pfam Response regulator receiver domain 885 952 IPR001789 GO:0000160
Bda01g00649 1023 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 1022 - -
Bda01g00649 1023 Gene3D - 437 703 IPR036890 -
Bda01g00649 1023 ProSiteProfiles Histidine kinase domain profile. 378 699 IPR005467 -
Bda01g00649 1023 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 333 IPR035965 -
Bda01g00649 1023 Coils Coil 188 208 - -
Bda01g00649 1023 Gene3D PAS domain 213 348 - -
Bda01g00649 1023 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Bda01g00649 1023 Coils Coil 92 112 - -
Bda01g00649 1023 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Bda01g00649 1023 CDD REC_hyHK_CKI1_RcsC-like 885 1018 - -
Bda01g00649 1023 Coils Coil 342 362 - -
Bda01g00649 1023 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Bda01g00649 1023 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 460 696 IPR036890 -
Bda01g00649 1023 MobiDBLite consensus disorder prediction 545 574 - -
Bda01g00649 1023 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 1022 - -
Bda01g00649 1023 SMART HKATPase_4 482 699 IPR003594 -
Bda01g00649 1023 Gene3D - 359 436 - -
Bda01g00649 1023 Gene3D - 877 1023 - -
Bda01g00649 1023 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00649 Bda-Chr1:33503972 Bda13g00598 Bda-Chr13:6969439 3.20E-46 dispersed
Bda11g00618 Bda-Chr11:6246838 Bda01g00649 Bda-Chr1:33503972 1.44E-07 dispersed
Bda01g00649 Bda-Chr1:33503972 Bda03g00959 Bda-Chr3:8683971 1.36E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15381 PF02518 HATPase_c 1.30E-21 CL0025 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00649 - - zju:107420093 1320.06