Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00649 ATGGTTTGCGAGTTGGAGAGCGACATCATGGAAGATATGGACATTGAGGACCTTCCCTCGATGTGGCCTGAAGATGTAGTGTCTAATGTCGGTAAGCAATTCAATGTAGAAAGGCCAAGAGGAGATCAAGATATGCTGGAAGAAGTTACCATAATAGAGGAGCCAACAATAGTGGATTTCAAACGCCTTTTGGAGTTGACCAACTACACTGAGAAAGGGTCTTCGCAATTGCAATATCTTGCGAAACAATGGGAATATAAGCAGGCAAATGCTGTTCGTCTTCTTAAAGAAGAACTTGACATTATGAACAAACAAAGGCAGGAATTTGAGCTCAAGGAATTGAAGATAGTTGAGGAGCATCTCTTTGAGGAAGAAAGATATGGTGATTATAAGCGTCCAATTTCTATTTTGGAAGAAGTTTATGACTTATGGCAAGATGTTCCTCAAAGAAAAAATGATTTTGTTTTTCAAAATAAGAGAGTTGAAATAGAGCCAGAGTATGATACCCTAACATATTGGAAGCAGAAGACAGTGAAGTTGGAGAAATTATTAGAAGCTAGTTTACAGCGAGAGCATATTTTAACAGAGAAGCTCCAGGAAAGTATAAAAAATATCGAGAAGCAGACATCACCAGTTGAGGAGTTATCCCAGATTTTGAAAAGAGCAGACAATTTTTTGCATTTCGTTCTTCAGAATGCTCCCGTTGTTATTGGTCATCAGGATAAAGAATTGCGATATCGTTTTATCTATAATCATTTTCCAAGTTTGGATGAGGAGGATATTATTGGAAAAACAGATGTTGAAATTTTTCATGGAGCCGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTTCTGGAAAAAAGAATACCTGCAAAGAGGGAAATTACTTTTGACACTCCATTATTTGGGTTAAAGACATTCTTGATATATGTGGAACCTGTCTTCAGTAAGGCCGGGGAGACAATTGGGATAAACTATATGGGAATGGATGTAACTGATCAGGTCAGGAAACGAGAAAAGATGGCAAAACTCAGAGAGGAGATAGCAGTGCAAAAGGCCAAGGAAACAGAACTAAACAAAACCATTCATATAACAGAGGAGACAATGAGGGCAAAGCAAATGCTGGCAACGATGTCTCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGTATGGCTGAGATTCTTGCCACTACAAAACTTGATCGGGAGCAGCGACAGCTTTTGGATGTTATGCTGTCTTCAGGGGATTTGGTGATTCAACTTATAAATGACATCTTGGATCTTTCGAAGGTTGAGTCAGGAGTTATGAAACTGGAAGATACAAAATTCCGACCTAGAGAGGTTGTGAAGCATGTCCTCCAGACAGCAGCTGCATCACTGCAGAAATGTTTACTCTTGGAAGGCCATGTAGCTGATGACGTTCCTGTGGAGGTCATTGGAGATGTTTTGAGGATTAGGCAAATTCTTACGAACTTGATAAGCAATGCAATCAAGTTTACTCATCAAGGAAAGGTTGGAATTAAGATTTATGTGGTACCAGATCAACTTTCTTGGAAAGGAGAAGAATGTCATCAGAGGTTTAATCCTCAGCATTCCACAGTTTTATCAACCGAATTGGAAGAAGAGAAATGTCCGTCAGTACCTCAGAATAGCTCAGATAGAAAAAATTATTTCCAAAAACAAGGGGATAGTCCTCAACAAAATCATTCGTTTTGCCCGGATATTAGAAGCACTGGTAACTGTGAACCTTTGGTGAATGGAAAAAGGGAGGAACATCACCAGGCACCCGAAACAACTGTGTGGATTCGCTGTGATGTTTACGACACAGGAATTGGAATACCAGAAAATGCATTACCTACACTTTTTAAAAAGTACATGCAAGTTAGTGCTGATCATGCCAGAAAGTACGGAGGGACGGGGCTGGGATTAGCAATAAGCAAACAACTGCCCCTAAGAACTTTTCTTAGCTTTATCGTTTCTTTATTATTTGGTCTTTCATTGTTGCAGGTTGAGCTGATCGGTGGTCGTTTGACAGTGTCTAGCCAAGAGCATCGTGGATCTACTTTTACATTTGTGTTACCATACAAGCTTTCAACCGCTGCCGACGCTACTGATGATTCTGATGAGATCGCAGATGTGACAAATTACGATGTGGCAAATAGTGATTCATCTGAAGGGTTTTTCCAATTTCAACCTGGCAGTTTTGGTTCGCTAACCTCTTCTAACGGACGTAGCAGAACTCAAAAGTTGTCGCATAACAACGGGTATGCGACGTCAAAAGAAAATGGATTACGATGGAGTTCTAATTCATTTCTCTCCAACGCAAGATCAAAAGAGATGCCTTTTCTTGAGGATGCCTGTTCAGTAGCTGATTCTACAACATTAGAGGAATCAAAAACTACACAAAATCATAACGAGAATTCAGTTTGTGGAGTGAGCCACTGTCAAGATAAGACAAATGATTCATCCTCCCTGAATGATTGTAATGATTCACCTCATAGCATGGGAAAAGAAAGAGAAGAGTTCATATCAAAAGGGACATTTGAACCCCAAGTAAATTCCAAGTGGAAGGAGAAATCTGATTCCAGATTTCAGTGCGTGAACAATGTCAATTCAGAAGTATCTCAATCAGCATTAAAACCTAGAATTCTTCTTGTGGAGGACAACAAGACCAATATAATGGTAACACAATCCATGATGAAGAAGTTGGGACATAGCATTGATGTTGTCACCAATGGAGCTGATGCAGTGCGAGCAGTTCAATGTTGTCACTACGATCTTGTTCTCATGGATGTGTGCATGCCGATTATGGATGGGCTCCAAGCTACACGATTAATTCGTTCTTTCGAAGAAGTAGGTAACTGGGATGCCGCAGAAAAGGCTGGAATCGAACCCGTGCAAGACCGGACTGTATCCAGTGGCAAGCGTATTCCCATAGTGGCTATGACAGCGAATGCGTTGGCTGAAAGTGCAGGAGAGTGCTTTGCAAATGGTATGGACTCTTTTGTTTCAAAGCCCGTCACTTTCCCACACTTGAAACAGTGCCTTGAACAATACTTAACGTGA 3072 40.49 MVCELESDIMEDMDIEDLPSMWPEDVVSNVGKQFNVERPRGDQDMLEEVTIIEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDIMNKQRQEFELKELKIVEEHLFEEERYGDYKRPISILEEVYDLWQDVPQRKNDFVFQNKRVEIEPEYDTLTYWKQKTVKLEKLLEASLQREHILTEKLQESIKNIEKQTSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLDEEDIIGKTDVEIFHGAGVKESQDFKREVLEKRIPAKREITFDTPLFGLKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILATTKLDREQRQLLDVMLSSGDLVIQLINDILDLSKVESGVMKLEDTKFRPREVVKHVLQTAAASLQKCLLLEGHVADDVPVEVIGDVLRIRQILTNLISNAIKFTHQGKVGIKIYVVPDQLSWKGEECHQRFNPQHSTVLSTELEEEKCPSVPQNSSDRKNYFQKQGDSPQQNHSFCPDIRSTGNCEPLVNGKREEHHQAPETTVWIRCDVYDTGIGIPENALPTLFKKYMQVSADHARKYGGTGLGLAISKQLPLRTFLSFIVSLLFGLSLLQVELIGGRLTVSSQEHRGSTFTFVLPYKLSTAADATDDSDEIADVTNYDVANSDSSEGFFQFQPGSFGSLTSSNGRSRTQKLSHNNGYATSKENGLRWSSNSFLSNARSKEMPFLEDACSVADSTTLEESKTTQNHNENSVCGVSHCQDKTNDSSSLNDCNDSPHSMGKEREEFISKGTFEPQVNSKWKEKSDSRFQCVNNVNSEVSQSALKPRILLVEDNKTNIMVTQSMMKKLGHSIDVVTNGADAVRAVQCCHYDLVLMDVCMPIMDGLQATRLIRSFEEVGNWDAAEKAGIEPVQDRTVSSGKRIPIVAMTANALAESAGECFANGMDSFVSKPVTFPHLKQCLEQYLT 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33503972 33510587 + Bda002677.1 Bda01g00649 649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00649 1023 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 697 IPR003594 -
Bda01g00649 1023 SUPERFAMILY CheY-like 883 1022 IPR011006 -
Bda01g00649 1023 SMART REC_2 883 1018 IPR001789 GO:0000160
Bda01g00649 1023 MobiDBLite consensus disorder prediction 541 574 - -
Bda01g00649 1023 ProSiteProfiles Response regulatory domain profile. 884 1022 IPR001789 GO:0000160
Bda01g00649 1023 Pfam Response regulator receiver domain 885 952 IPR001789 GO:0000160
Bda01g00649 1023 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 1022 - -
Bda01g00649 1023 Gene3D - 437 703 IPR036890 -
Bda01g00649 1023 ProSiteProfiles Histidine kinase domain profile. 378 699 IPR005467 -
Bda01g00649 1023 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 333 IPR035965 -
Bda01g00649 1023 Coils Coil 188 208 - -
Bda01g00649 1023 Gene3D PAS domain 213 348 - -
Bda01g00649 1023 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Bda01g00649 1023 Coils Coil 92 112 - -
Bda01g00649 1023 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Bda01g00649 1023 CDD REC_hyHK_CKI1_RcsC-like 885 1018 - -
Bda01g00649 1023 Coils Coil 342 362 - -
Bda01g00649 1023 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Bda01g00649 1023 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 460 696 IPR036890 -
Bda01g00649 1023 MobiDBLite consensus disorder prediction 545 574 - -
Bda01g00649 1023 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 1022 - -
Bda01g00649 1023 SMART HKATPase_4 482 699 IPR003594 -
Bda01g00649 1023 Gene3D - 359 436 - -
Bda01g00649 1023 Gene3D - 877 1023 - -
Bda01g00649 1023 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00649 - - - zju:107420093 1320.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00649 Bda-Chr1:33503972 Bda13g00598 Bda-Chr13:6969439 3.20E-46 dispersed
Bda11g00618 Bda-Chr11:6246838 Bda01g00649 Bda-Chr1:33503972 1.44E-07 dispersed
Bda01g00649 Bda-Chr1:33503972 Bda03g00959 Bda-Chr3:8683971 1.36E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01830 . 533 1712 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1443.7
Bda14g00969 . 504 1648 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1357.0
Bda13g00598 . 305 1278 Histidine Kinase Gene Family AT2G01830 51.7 1.5e-270 929.5
Bda06g00425 . 197 1076 Histidine Kinase Gene Family AT2G01830 53.3 6.4e-250 860.9
Bda01g00649 . 1 1022 Histidine Kinase Gene Family AT5G10720 54.8 3.5e-284 974.5
Bda01g01665 . 2 1120 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1753.0
Bda06g00414 . 12 1121 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1250.7
Bda11g00500 CCT 29 1120 Histidine Kinase Gene Family AT1G09570 53.0 0.0e+00 1164.1
Bda01g00824 . 36 875 Histidine Kinase Gene Family AT1G09570 54.3 2.6e-265 912.1
Bda08g00333 CCT 1 680 Histidine Kinase Gene Family AT1G09570 52.1 6.9e-202 701.4
Bda11g00500 CCT 30 1061 Histidine Kinase Gene Family AT2G18790 76.6 0.0e+00 1604.0
Bda07g00948 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1223.8
Bda01g00824 . 15 877 Histidine Kinase Gene Family AT2G18790 66.0 0.0e+00 1152.9
Bda06g00414 . 23 1076 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1114.8
Bda01g01665 . 22 1055 Histidine Kinase Gene Family AT2G18790 51.0 1.0e-306 1049.7
Bda08g00333 CCT 1 616 Histidine Kinase Gene Family AT2G18790 73.8 3.0e-269 925.2
Bda06g00414 . 10 1119 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1400.6
Bda11g00500 CCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1123.6
Bda01g01665 . 10 1115 Histidine Kinase Gene Family AT5G35840 50.5 0.0e+00 1103.6
Bda01g00824 . 40 871 Histidine Kinase Gene Family AT5G35840 52.1 1.1e-255 880.2
Bda11g00500 CCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1639.0
Bda07g00948 . 36 1107 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1250.0
Bda06g00414 . 24 1118 Histidine Kinase Gene Family AT4G16250 52.2 0.0e+00 1135.6
Bda01g00824 . 35 875 Histidine Kinase Gene Family AT4G16250 64.7 0.0e+00 1115.9
Bda08g00333 CCT 1 676 Histidine Kinase Gene Family AT4G16250 71.4 7.2e-287 983.8
Bda07g00948 . 14 1108 Histidine Kinase Gene Family AT4G18130 60.6 0.0e+00 1332.0
Bda11g00500 CCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1252.7
Bda01g00824 . 14 871 Histidine Kinase Gene Family AT4G18130 68.5 0.0e+00 1168.7
Bda08g00333 CCT 1 677 Histidine Kinase Gene Family AT4G18130 54.3 1.6e-211 733.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15381 PF02518 HATPase_c 1.30E-21 CL0025 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00649 Bda_Chr01 FPKM 8.643237 8.146852 0.498353 0.508709 1.629091 2.411749 2.640544 0.533117 0.636346