Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00659 CTAATCTCAATCAGTATGTCCTCGAGAAACTCTTCTTACAGTAACCCAATACCTTGCAAGCATCTTGCAGATTATAAGCTTAGGTATGGGTTAAACGCCTATAAATCAATCCAAAAATGCCTCAAAACTACCCCAAATGGGAGAACTCGAATTCAAAACCTAGATACAGAGATACCCAAATGCTGTTCTTGTAATAGGTACGAAGGTAGACTTTATTTTTGCTTGATTTGCTCTTCAATCTCTTGTTCGAACCACACCCTTTTGCATATCGAATCGGAAGGTAGCCACGTTATTGCCGTGGACGTCGATAGGGCTGAGCTCTACTGCTGCGAGTGCTCTGATCAGGTCTATGATCCGGATTTCGATAAGTGTGTGATGACGAAACACATCAATGGGTTCCCCAAAGATTTGGAAGAATCCGAAAGTATTGGAGAAAGGTTGAGTAAGAGGAGGAGATTGAGTTCGGTGTTTGGGGAAGAGTTGCTCGATTCGAAGAAATTGAAATCTTTAAATTCTCTGAGAGATCTGAGACAGAAATCGTGTTATCCATTAGGTTTGAGGGGTTTGAATAATTTGGGCAGTACTTGTTTCATGAATTCCATTTTGCAAGTACTGATTCATTCGCCCCCTTTTAGAAATTATTTCTTGACTGATCAGCACAATCGACAAACCTGCCGGAAAAGATCAGCCGACCACCTTTGTTTGCCGTGTGACATTGCTGCCCTTTTATCGGCTGTATTTTCCGAGGATCGGACCCCTTATACTCCTGCTCCATTTCTTTACAGTTGGTGGCAGCACTCGACCAATCTAGCCAGTTACGAGCAGCAGGACGCCCACGAATTCTTCATTTCCCTACTAGACAGCATCCACGAGAAAGAGGCAAAAGCAAGAAATCACATTAGAGTAGGTCATGGAGATTGCAAATGTATTGCTCACAAGGTATTTTCTGGACAATTAAGATCAGATGTCACTTGTATGACTTGTGGATTTACTTCAACAACATACGACGGATGTTTGGATTTGTTCACCAGACTGGAGAAATTGGGATCGGATCAGAAACTTTTTTGCCAAAACTGTCAAAAACGACAGAATTCGTTGAAGCAAATGTCGATAAGAAGGCTTCCGTTAGTCTTGAGCTTACACATGAAGCGCTTCGAGCATTCGACTGTCAACAACACGTCAAAAAAGATCGATCGCTATTTGCACTTCCCGTTTTCCTTGGACATGATGCCATATTTGTCGTCTTCAATTGTGAGGAACAGATTTGGAAACAGGATCTTCGCCTTCGAGGGTGACGAATCTGATGTTTCAACTGAGTTTGAGATTTTTGCCGTGATTGCTCATTTTGGGACCCTCGAATCTGGTCATTACGTGACTTATTTACGATTAAGGGACCAATGGTACAAATGTGACGATGCTTGGATCACAAAGGTGGATGAAGGGGCGGTGAGAAATTCACAATGTTATATGATGTTTTATCTGCAGAAAAAGCTTTGCTACAAATCGAACGATGATTTTGGTTGCCTGCCGATTTCGCCCTGCAGTGACTCGTACCATTCCGTTGCTGGTTGCTGCTGA 1578 42.59 LISISMSSRNSSYSNPIPCKHLADYKLRYGLNAYKSIQKCLKTTPNGRTRIQNLDTEIPKCCSCNRYEGRLYFCLICSSISCSNHTLLHIESEGSHVIAVDVDRAELYCCECSDQVYDPDFDKCVMTKHINGFPKDLEESESIGERLSKRRRLSSVFGEELLDSKKLKSLNSLRDLRQKSCYPLGLRGLNNLGSTCFMNSILQVLIHSPPFRNYFLTDQHNRQTCRKRSADHLCLPCDIAALLSAVFSEDRTPYTPAPFLYSWWQHSTNLASYEQQDAHEFFISLLDSIHEKEAKARNHIRVGHGDCKCIAHKVFSGQLRSDVTCMTCGFTSTTYDGCLDLFTRLEKLGSDQKLFCQNCQKRQNSLKQMSIRRLPLVLSLHMKRFEHSTVNNTSKKIDRYLHFPFSLDMMPYLSSSIVRNRFGNRIFAFEGDESDVSTEFEIFAVIAHFGTLESGHYVTYLRLRDQWYKCDDAWITKVDEGAVRNSQCYMMFYLQKKLCYKSNDDFGCLPISPCSDSYHSVAGCC 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33600058 33602349 + Bda002687.1 Bda01g00659 659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00659 525 SMART Zf_UBP_1 60 107 IPR001607 GO:0008270
Bda01g00659 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 133 IPR013083 -
Bda01g00659 525 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 10 340 - -
Bda01g00659 525 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 340 - -
Bda01g00659 525 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 337 518 - -
Bda01g00659 525 Pfam Zn-finger in ubiquitin-hydrolases and other protein 61 120 IPR001607 GO:0008270
Bda01g00659 525 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 188 203 IPR018200 GO:0004843|GO:0006511
Bda01g00659 525 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 337 518 - -
Bda01g00659 525 ProSiteProfiles Zinc finger UBP-type profile. 17 137 IPR001607 GO:0008270
Bda01g00659 525 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 187 496 IPR028889 -
Bda01g00659 525 SUPERFAMILY Cysteine proteinases 183 493 IPR038765 -
Bda01g00659 525 Gene3D Cysteine proteinases 338 500 - -
Bda01g00659 525 Gene3D Cysteine proteinases 182 337 - -
Bda01g00659 525 Pfam Ubiquitin carboxyl-terminal hydrolase 188 493 IPR001394 GO:0004843|GO:0016579
Bda01g00659 525 SUPERFAMILY RING/U-box 17 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00659 K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] - csv:101210858 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00659 Bda-Chr1:33600058 Bda02g00196 Bda-Chr2:36628046 0 dispersed
Bda11g00131 Bda-Chr11:1795381 Bda01g00659 Bda-Chr1:33600058 2.46E-15 dispersed
Bda01g00659 Bda-Chr1:33600058 Bda13g01355 Bda-Chr13:35919912 4.81E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00659 Bda_Chr01 FPKM 3.838889 3.541279 6.965844 7.741806 2.673776 2.142269 2.791428 8.589942 8.79935