Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00660 ATGCAGGCGGATCAGACGGTGATAAGCTTGAGACCAGGTGGAGGTGGTGCCTTTCGTGTCTCTAAATTCTTCACCCCTCGCTTTGAATCTTCTTCCTCCGACGCTCCCACCTTGCGTCCTCATGGCGGCCCCGCACCTGTCCTTAAGAGTGGATACTTGCATTTTGAAGGACATGAGCGTATCATGTACTCCAAAGATCAGCTATTGCAACTTAGAGAGGTCAAAACTGTTCCGGAAGATATATTGAAGATCAAACAAGAAATTGATATTGAGTTTTTCGGTGAAGATCAAACATTGGCTCATGCAGGTGCATCACATCTTCCCTCCCAAAGTCGTTATTCTGAACTAGACAACCGTGATTGGCGTGGTCGATCTGCACAGTTGCCTGCCTCTGGCGAGGAGAGATCTTGTAATGACAATAAGGATTTAAGGTCTCAAGATATTAATGGTCAACAAGATCAATCAAAATCCCAGTTTGCTGGGTCACGAATTTCTAGTCAAGGGGTAGGTCCTACCCCATCTCTTGTCAAGGCTGAAGTTCCATGGTCAGTGCGTAGAGGAAATCTATCTGAGAAGGAACGTGTCTTAAAAGCAGTGAGGGTAATTATGAATATTAATTTTAATACTAATATACTTAATAAATTGACCCCTGAGAAGTTTGACGTCCTCAAGGGTCAGCTGATTGACTATGGAATAACAACCCCTGATATTCTAAAGGGTGTTATCTCACTTATATTTGAGAAAGCTGTACTGGAACCAACATTTTGTCCCATGTATGCTCTTTTATGCTCTGATCTTAATGACAAGCTTCCTCCATTCCCATCTGATGAGGTTAAAGGGAAGGATATAACCTTTAAACGAGTTCTATTGAATATTTGTCAAGAGGCGTTTGAAAATGCCGACAATCTGAGGGCGGAAATTAGGCAGATGGCAGATCCTGAGCTAGACACAGATCGAAGAGACAAGGAAAGAATGGTTAAACTGCGAACTCTTGGAAACATACGCCTCATTGGTGAACTATTGAAGCAGAAGATGGTGTCTGAAAAAATTGTTCATCATATTGTTCAGGAGCTTTTGGGATCTGAAGGGAAAGTGTGTCCGGCTGAGGAAAATGTTGAGGCCATATGTCAATTTTTTAGCACCATTGGTAAGCAGCTGGATGATGGGCCAAGATCTCGAAGAGTCAATGATATGTATTTTAGCAGGCTGAAGGAACTGACTACAAACATCCAACTTGCACCTAGATTGAGGTTCATGGTCCGTAACGTTATTGATTTGCGTGCTAACAACTGGGTTCCAAGACGTGAAGAGGTGAAAGCAAAGACTATTACTGAAATACATTCGGAGGCAGAAAAAAATTTAGGGCTACGTCCCGGTTCAACTGCAATAATGAGAAATGGTCGTAATGCTGCAGGCATTGGGGGAATAAGCCCTGAAGGTTTCCCCATAGGCAGACCTGGGTCAGGAGGTTTAATGCCTGGTATGCCTGCAACGAGAAGGATGCCTGGTATGCCTGGGCTTGATGGTGACAATTGGGAGGTTCCTCCATATCGATCAACAGGAAGAAATGACGGTCTTATACAGTCTGCTGGACGTGCGCAACCTCATTTAATTGGCAAAATACCGTCCCTAAATTCAAAATATCTTCCCCAGGGAAGTGGTGGTATAATAACAGGGAAAACAAGCGCCTTGTTGCAGGGTAGTAATGCCCCTCCTTTGTCCCATCCTAGTAATATTACTGGGATAGATCCTCCTGTCACTCACAACTCTAAGCCTGTGGCTACAACTGTCTCAGCGAAACCCTCTCCCAAGAAGCCGGAAGTTCCCTCAACAAGGTCTAATCCTGCAGATCTTCATAAGAAAACTGTTTCACTTCTAGAGGAATATTTCAGTGTTCGACTTCTTGATGAAGCTCTGCAGTGTGTGGAGGAGTTGAAATCCCCTGCCTATCACCTGGAGGTTGTTAAAGAAGCAGTTGCTCTTTCGCTAGAAAAGATTCCACCATGTGTGGAACCAGTCAGCAAGCTTCTTGGGTACTTGTTCAATAAAGACTCGTTGACTGCTCTAGATATAAGGGGTGGGTGCCTTCTTTATGCCTCGATGATGGATGATATCGCCATTGATTTGCCAAAAGCTCCTAATAATTTTGGAGAGATTTTAGGAAATTTGTTTTTGATTGGTGGCTTGGACCTTAAAGTTGTGAAGGAAATTCTAACAAAGGTGGAAGATAACTTTTACAGGACTTCCATCTTTGGTGGTGCCGTTAAAAGCATAAAATCAAGCCCATCGGGGCAAGCAATTTTGGAAGCTAAGGCTGCTGAGGTAAAGGCCTGTGAGAGTGTTCTCTCGTAA 2352 43.71 MQADQTVISLRPGGGGAFRVSKFFTPRFESSSSDAPTLRPHGGPAPVLKSGYLHFEGHERIMYSKDQLLQLREVKTVPEDILKIKQEIDIEFFGEDQTLAHAGASHLPSQSRYSELDNRDWRGRSAQLPASGEERSCNDNKDLRSQDINGQQDQSKSQFAGSRISSQGVGPTPSLVKAEVPWSVRRGNLSEKERVLKAVRVIMNINFNTNILNKLTPEKFDVLKGQLIDYGITTPDILKGVISLIFEKAVLEPTFCPMYALLCSDLNDKLPPFPSDEVKGKDITFKRVLLNICQEAFENADNLRAEIRQMADPELDTDRRDKERMVKLRTLGNIRLIGELLKQKMVSEKIVHHIVQELLGSEGKVCPAEENVEAICQFFSTIGKQLDDGPRSRRVNDMYFSRLKELTTNIQLAPRLRFMVRNVIDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSTAIMRNGRNAAGIGGISPEGFPIGRPGSGGLMPGMPATRRMPGMPGLDGDNWEVPPYRSTGRNDGLIQSAGRAQPHLIGKIPSLNSKYLPQGSGGIITGKTSALLQGSNAPPLSHPSNITGIDPPVTHNSKPVATTVSAKPSPKKPEVPSTRSNPADLHKKTVSLLEEYFSVRLLDEALQCVEELKSPAYHLEVVKEAVALSLEKIPPCVEPVSKLLGYLFNKDSLTALDIRGGCLLYASMMDDIAIDLPKAPNNFGEILGNLFLIGGLDLKVVKEILTKVEDNFYRTSIFGGAVKSIKSSPSGQAILEAKAAEVKACESVLS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33611765 33618557 + Bda002688.1 Bda01g00660 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00660 783 SUPERFAMILY ARM repeat 208 433 IPR016024 -
Bda01g00660 783 Pfam MA3 domain 619 729 IPR003891 -
Bda01g00660 783 Pfam MIF4G domain 206 430 IPR003890 GO:0003723|GO:0005515
Bda01g00660 783 MobiDBLite consensus disorder prediction 583 616 - -
Bda01g00660 783 Gene3D - 208 443 - -
Bda01g00660 783 MobiDBLite consensus disorder prediction 103 173 - -
Bda01g00660 783 SMART if4_15 205 430 IPR003890 GO:0003723|GO:0005515
Bda01g00660 783 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 783 IPR045208 GO:0003743
Bda01g00660 783 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 783 - -
Bda01g00660 783 MobiDBLite consensus disorder prediction 143 172 - -
Bda01g00660 783 ProSiteProfiles MI domain profile. 617 739 IPR003891 -
Bda01g00660 783 SUPERFAMILY ARM repeat 614 770 IPR016024 -
Bda01g00660 783 SMART ma3_7 618 730 IPR003891 -
Bda01g00660 783 MobiDBLite consensus disorder prediction 583 597 - -
Bda01g00660 783 Gene3D - 613 777 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00660 Bda03g00106 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00660 Bda-Chr1:33611765 Bda09g00900 Bda-Chr9:25213730 0 dispersed
Bda01g00660 Bda-Chr1:33611765 Bda03g00106 Bda-Chr3:956482 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00660 K03260 - qsu:112035365 1046.19