Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00668 ATGGCTCCGGCGACTAACTGGCTCTCGTTCTCTCTATCTCCGGTTGAAATGCTGAGGTCTTCTGCTGAATCTCAGTTTATGCCTTACGACACCTCGTCCACTGCTTCTCATCCCTACTTGATCGATAATATCTACTCAAATGGTACTGCATCTGGTTTGATTGTTCTTTCAGGTTGGGGAAACCACAAACAAGTTCAAGCTTCAAGTAGTATCGCCGATTCACATATTCTGACTAGCTTTATCGACCACAATTGCCAAAACCAAGGAGCACCGAAACTGGAAGACTTTCTCGGTGAGTCGTCGTTAATGGTTCGATATTCCGATAGCCAAACGGAAACTCAAGACTCGTCTTTAACCCAAATCTATGACCATGGTTCAACCTACTTCAACGACCAGCAAGATCTCAAAGCTATTACTGGGTTTCAAGCTTTCTCAGCCAACTCTGGTTCGGAAGTGGATGACTCGGCATCTATCGCTCGGAACCAGCTCGCTTGCGGCGAGTTCGCCGGCCATTCTATTGAGTCGTCCGGCACCGTATTAGCCTTCACTAATTGTTCTACCGGTGCACTGTCACTCGGGGTAGCTCAGAGATCGGAAACAGCGGTTGTTCCGATAGAATCTGATAGCTCGAAGAAGATTGTTGATACTTTTGGCCAGCGAACTTCGATTTACAGAGGCGTTACTCGACACAGATGGACTGGTAGATACGAAGCCCATCTATGGGATAACAGTTGTCGAAGAGAAGGACAGGCTAGGAAAGGGCGTCAAGGTGGATATGACAAAGAAGATAAGGCAGCGAGGGCTTATGATCTGGCAGCTTTGAAATACTGGGGTCCCACTGCCACTACCAACTTTTCTGTTTCTAATTACACCAAAGAACTGGAGGAGATGAAACATGTGACTAAGCAAGAATTCATTGCTTCTCTTCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCGATTTATAGAGGCGTGACAAGGCATCATCAACAGGGAAGGTGGCAAGCGAGAATAGGCCGAGTTGCTGGGAATAAGGATCTGTACCTCGGGACATTTGCGACCGAAGAGGAAGCGGCTGAAGCTTACGATATCGCAGCAATAAAGTTCAGAGGCTTAAATGCGGTCACAAACTTCGAGATGGGACGGTACGATGTGGAAGCAATTTCAAAGAGCAATCTCCCCATAGGAGGAGCTGCAAAAAGGTTAAAGCTCTCACTCGAATCCGAGCAGAAGCCATCCATTATGCACCATAATTTACAGCCATCGAGCATTAGTGGCGGAAACAACATAAGTTTCGGTGCAATTCAACCTGTTCCGGCTATCTCACGTGGACTGCCGTTTGAAGCTTCCACTTCTCCAATGCTTTATCATCATAATCTCTTCCACCACCTCCAACCCAACAGCACCAGCACTCTTGGTTCGACTTCTAACCCTACTATGGCAGCTCCAACGAATGTGATGCCACGGCAGCCAGAATTTTATGTGTGGCCTCACCAGTCCTATTGA 1509 47.25 MAPATNWLSFSLSPVEMLRSSAESQFMPYDTSSTASHPYLIDNIYSNGTASGLIVLSGWGNHKQVQASSSIADSHILTSFIDHNCQNQGAPKLEDFLGESSLMVRYSDSQTETQDSSLTQIYDHGSTYFNDQQDLKAITGFQAFSANSGSEVDDSASIARNQLACGEFAGHSIESSGTVLAFTNCSTGALSLGVAQRSETAVVPIESDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFSVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGAAKRLKLSLESEQKPSIMHHNLQPSSISGGNNISFGAIQPVPAISRGLPFEASTSPMLYHHNLFHHLQPNSTSTLGSTSNPTMAAPTNVMPRQPEFYVWPHQSY 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33698071 33701484 + Bda002696.1 Bda01g00668 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00668 502 CDD AP2 321 380 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 Pfam AP2 domain 322 372 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 Pfam AP2 domain 223 278 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 CDD AP2 222 288 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 ProSiteProfiles AP2/ERF domain profile. 322 380 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 Gene3D AP2/ERF domain 322 381 IPR036955 GO:0003700|GO:0006355
Bda01g00668 502 Gene3D AP2/ERF domain 223 288 IPR036955 GO:0003700|GO:0006355
Bda01g00668 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 479 - -
Bda01g00668 502 SMART rav1_2 223 292 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 SMART rav1_2 322 386 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 479 - -
Bda01g00668 502 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 PRINTS Ethylene responsive element binding protein signature 362 382 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 ProSiteProfiles AP2/ERF domain profile. 223 286 IPR001471 GO:0003700|GO:0006355
Bda01g00668 502 SUPERFAMILY DNA-binding domain 321 381 IPR016177 GO:0003677
Bda01g00668 502 SUPERFAMILY DNA-binding domain 222 288 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00668 Bda-Chr1:33698071 Bda07g01133 Bda-Chr7:13478377 8.96E-118 dispersed
Bda01g00668 Bda-Chr1:33698071 Bda11g01553 Bda-Chr11:48349637 1.64E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15382 PF00847 AP2 1.10E-08 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00668 K09285 - jre:108990656 707.597