Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00675 ATGGGGAGAGGAAAGATCGAGATCAAGAGGATAGAAAACTCAAGTAACAGGCAGGTGACTTACACAAAAAGAAGGAATGGGTTGTTGAAGAAAGCCAGAGAGATTACTGTTCTGTGCGATGCTCAAGTTTCCCTCGTTATCTTTGCTGCTACTGGAAAGATGCATGAATACCATAGCCCTTCTACCCCTTTGATTGATATCTTGGATAAGTATCACAAGCAGTCTGGAAAGAGGCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATCGATCGGATCAAAAAAGAAAACGACAGCATGCAGATCGAGCTCAGGCATATGAAGGGAGAGGATCTCACCTCCTTGAACTACAAGGAGCTCATGGCCCTCGAAAACGCCCTTGAAAACGGCCTCAACGGTGTTCGTGAAAAACAGGCTTGTATCCTGAAAACCCATTTCGGAAAAATGCTGGAAGAGGAGAACAAAAGACTCGGCTATGAGCTGTACCAGAAGGAGATGGTGGGGATGGGAGAGAACGTAAGAGAGATGGAAAATGGGTACCAGCAGAGGATGCGGGAGTTCAATGAGCTGCCATTTTCATTCAGAGTTCAGCCAATTCAGCCTAATCTGCAAGAGAGGATCTAA 627 45.45 MGRGKIEIKRIENSSNRQVTYTKRRNGLLKKAREITVLCDAQVSLVIFAATGKMHEYHSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEIDRIKKENDSMQIELRHMKGEDLTSLNYKELMALENALENGLNGVREKQACILKTHFGKMLEEENKRLGYELYQKEMVGMGENVREMENGYQQRMREFNELPFSFRVQPIQPNLQERI 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33914706 33916876 + Bda002711.1 Bda01g00675 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00675 208 ProSiteProfiles K-box domain profile. 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g00675 208 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Bda01g00675 208 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 207 - -
Bda01g00675 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda01g00675 208 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Bda01g00675 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda01g00675 208 Pfam K-box region 82 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g00675 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda01g00675 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda01g00675 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda01g00675 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bda01g00675 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 - -
Bda01g00675 208 Coils Coil 77 111 - -
Bda01g00675 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda01g00675 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00675 Bda-Chr1:33914706 Bda04g00032 Bda-Chr4:528368 2.83E-45 dispersed
Bda01g00675 Bda-Chr1:33914706 Bda13g01351 Bda-Chr13:35864550 9.92E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15383 PF01486 K-box 1.80E-17 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00675 K09264 - csv:101222239 344.354