Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g00675 | ATGGGGAGAGGAAAGATCGAGATCAAGAGGATAGAAAACTCAAGTAACAGGCAGGTGACTTACACAAAAAGAAGGAATGGGTTGTTGAAGAAAGCCAGAGAGATTACTGTTCTGTGCGATGCTCAAGTTTCCCTCGTTATCTTTGCTGCTACTGGAAAGATGCATGAATACCATAGCCCTTCTACCCCTTTGATTGATATCTTGGATAAGTATCACAAGCAGTCTGGAAAGAGGCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATCGATCGGATCAAAAAAGAAAACGACAGCATGCAGATCGAGCTCAGGCATATGAAGGGAGAGGATCTCACCTCCTTGAACTACAAGGAGCTCATGGCCCTCGAAAACGCCCTTGAAAACGGCCTCAACGGTGTTCGTGAAAAACAGGCTTGTATCCTGAAAACCCATTTCGGAAAAATGCTGGAAGAGGAGAACAAAAGACTCGGCTATGAGCTGTACCAGAAGGAGATGGTGGGGATGGGAGAGAACGTAAGAGAGATGGAAAATGGGTACCAGCAGAGGATGCGGGAGTTCAATGAGCTGCCATTTTCATTCAGAGTTCAGCCAATTCAGCCTAATCTGCAAGAGAGGATCTAA | 627 | 45.45 | MGRGKIEIKRIENSSNRQVTYTKRRNGLLKKAREITVLCDAQVSLVIFAATGKMHEYHSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEIDRIKKENDSMQIELRHMKGEDLTSLNYKELMALENALENGLNGVREKQACILKTHFGKMLEEENKRLGYELYQKEMVGMGENVREMENGYQQRMREFNELPFSFRVQPIQPNLQERI | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33914706 | 33916876 | + | Bda002711.1 | Bda01g00675 | 675 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g00675 | 208 | ProSiteProfiles | K-box domain profile. | 84 | 168 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda01g00675 | 208 | Gene3D | - | 13 | 102 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | PANTHER | FLORAL HOMEOTIC PROTEIN PISTILLATA | 1 | 207 | - | - | |
Bda01g00675 | 208 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | Pfam | K-box region | 82 | 156 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bda01g00675 | 208 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Bda01g00675 | 208 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 207 | - | - | |
Bda01g00675 | 208 | Coils | Coil | 77 | 111 | - | - | |
Bda01g00675 | 208 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g00675 | 208 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00675 | Bda-Chr1:33914706 | Bda04g00032 | Bda-Chr4:528368 | 2.83E-45 | dispersed | |
Bda01g00675 | Bda-Chr1:33914706 | Bda13g01351 | Bda-Chr13:35864550 | 9.92E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15383 | PF01486 | K-box | 1.80E-17 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g00675 | K09264 | - | csv:101222239 | 344.354 |