Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00676 ATGGTTCCTTTAATAAATTATTGCTTTCAGAAAAATGAGTTGAAGGACACCGATGGCATTACTGGTTTTGTGGTTCCGGATAAACTAGAACGCTTCAATAAATTGGCATCTACTCTAAGAGATCACATAGAACCACTGTTGCCAAAAGCTTGTGATTCGGTCATGCATAGTGTTATGGATTCTTGTAATATGGACGACAAGCATGCTATTGGGTTCTCCACAGAGAATAACATTGAGGTTGCTGGACTTGAAAATGGATTTGTCGACTCCTGCATCACTATAATTCCGTCAATGGGTTGCCAGAAGACTGATGAAATATTGCAACATGATGGTTTCTTAACTACCATTATCCAAGAAAGTGAGTGTCTGGAGGAAAAGAGTTGCATCGGTTCTTTGGGGCAAAGCAGTTTAGAAGTTGCGAAAGATTGTAATCACATTACCATGAACTCAAAAGTTGATGTTGCCAAAAATGCAATGCCACTAGAAAGAAACAGCAATTTGAAGGAAGGTTTCATAACAGGAAATTCAGTTGCTGAGAAGTCAACATCTCAAGAACTATGCCATCCTTTTGATGTTAGAGATGATGGATCTTTCGAAATGATGAATACACAAAATATTTCTGTTGGAGATGCTACTTTCCTTAGCTCTAGCAGAGTCTGTGACAGTTCTGGGCAGATTGATTATGGGAGCAGAGACAATTTCAGAGTTGATTGTGTTCCTGAAGTCAATTGTGCTGATGCTGTGGCATCTACTTCTGGACTTAATAATGTTCAGAGAAGTAAATCAGTGAGGAAGACTCGTACAAAAAAATCTACTAAGAGGAGCAAGGGCGCAAGAAAAGCGCCACACTCATGTAGGAATGTTCAAATTATATTTGAGGCTGCTAGAAGAAAGAGAACTTGTCTCTCCAAACCGTCCCGCTCGACTATATGGGGATCGCTAAGCTGTGTTACTCAATCTTCCTGGGTAAGTAGTGAGGTTCAGATTCAACAATTTCAGAATCAAGAATTAATGAAAGGGAGGAAGGGTAGACATAATGCCAAGCAGAATAAGAATGAGAGAAAACGAAGATCAAAAGGGTCAAAGCGAGAAAAGTGCTCTACTTCAACTGGTTGTCTCCGTTTGAAGGTTAAGTTGGGGAAACAGATGGATCAAAGTTTTTTGAATATAATGATTCCTGATGTAGATACATCACTGTCGGCTACTGCTACTAATAGTAGTTGTGGGACAGAGCCATATTGGAAAACGAGTTTTGATTTCCCTAAATTAACTAAGCGTAATGAATGTGAAGTTCTTGAAGAGGCAACTGGTAAGCATGTGAATTCCAAAGAAAACCCTGATAATCTTCATTGTACTCTTTCAAGCATTCAACTAGAAAATGAGAAGTATTCACCTGCCAAGAATGCTTGGGTTCTCTGTGATGATTGTCAGAAATGGCGCCGAATACCAGCTGGTCTTGTAGATTCCATTGGACAAGAAAGTTGTACTTGGACCTGCAAGGACAACACTGATAAATCATTTGCTGATTGTTCAATCCCTCAAGAAAAATCAAATGTAGAAATCAATGCTGAGCTGGAAATATCAGACGCCTCTGGTGATGACGAAGCTTCACGTGCCCGCCGAACTTATAGACTAATGGAAAATCAGCGGTCAAAAGTTTTACAAGAGCGGGGATATACAAGAATCAAAAGCAATCATTATCTGCACCGAACTCGTAAATCCCAGACTATCGATGAGATAATGATTTGCCATTGCAAAGCACCTTCTAATGGCAAGGTTGGCTGTGGAGATGAATGCTTGAATCGCATGCTTAATATTGAATGTAACCGAGGCACATGCCCTTGCGGTGATCTATGTTCTAATCTACAGTTCCAAAAACGCAACTACGCTAAGTTAGGACGCTTAAAATGTGGGAAAAAGGGTTTTGGATTGCAGCTGCTCGAGGATATATCCCAAGGACAATTCCTCATTGAATATGTCGGAGAGGTGCTTGACATGCCTGCTTATGAGGCTCGACAGAAAGAATATGCTATGTATGGGCATCGACATTTCTACTTCATGACCTTGAATTGCAATGAGGTAATAGATGCGTCTGCTAAAGGAAATTTGGGTCGTTTCATTAATCATAGTTGTGAACCTAACTGTCGTACAGAAAAGTGGATGGTGAACGGAGAAATTTGTATTGGACTGTTCGCTTTAAGGGATATTAAGAAGGGTGAAGAGGTGACTTTTGACTACAATTATGTGAGGGTTTTTGGGGCAGCTGCTAAAAAATGTTACTGTGGTTCTCCTCACTGTCGTGGCTTTATAGGTGGGGATCCACTTAATTCTGGAGTTATTGTTCAGAGTGATTCAGATGAAGATTATTTGGAACCTGTGATGCTTCTTGAAGATGGTAAAGCCAATGATGTACCTTCTGCAAGTCAAGTGCTTGAAAGTTCTCAGCAAACAGATATAACCAGTAAAACCACGTCTACTGCTCATCCAGACATCATTGTTCAGAGTCCATCTCACAAAAATTCTTGCATTGCTGAAGATACCGAGCCTTCTTGTCTAAATTCAATGAACAATAAGTCATTGTCTGATGGTTGTGATTCTAATAAGAAGTTTGATGCAGTTGAACACAAGCGGGGGTCTTCGAAGCGACGCCCTCTTGTGAAGACTTCACGTAAATCTGGCTTTGTTAAGAAAGGAAATGTGACTAATGATCCTTTACATTCCAACAAAGTACCTGTATCGGTCAACAAACTGCTATCTGTGAAGCCAAAGAAAATAATGGAAGCTTCAGTTGAGGAGAAACTTAATGAGTTGCTGGACACGTGTGGGGGTATAAGCAAAAGAAAGGACGCTGCAAGGGGCTACTTGAAGCTGTTGCTTCTCACTGCAGCCTCAGGTGATAGAGTTACTGGCGAAGCTATTCAAAGCAATAGAGACCTCTCAATGATTCTTGATGCTCTTTTAAAGACAAAGTCGCGAGTGGTGCTGACTGATATCATTAATAAAAATGGTCTGCAGATGTTGCACAACATGATGAAACAATATAGGTGTGACTTCAAAAAGATTCCTATCCTTCGAAAGCTTCTTAAGGTGTTAGAGTATTTGGCAGTGAGAGAGATAATTTCTTCGGAGCATATTAATGCTGGTCCTCGCTGTCTAGGAATGGAAAGTTTTGCGGAGTCCATGCTGTCACTGACGGAGCATGATGACAAGCAGGTCCATCATATTGCAAGAAAGTTTCGGGGCAGATGGATTCATAGGCCTCTCAGAAAATTTATGAAGGAGAAGGATGATGGTGTCAAGCAATTAGTGGTTGCTGATGCTGCTATACATATTAATGTCGGACCAGGCTGTTCTAGATCTCCTTTGAATGATCATATAGATACCCCCAAACCTCGTAAACGTAAGAGTCGATGGGATCAGCCAACAGCTTCTATAGCAGAGTCAAGAGCTCTTCAGCCCATGGAACAGAAATTAGAATCCAGTCTATCGAATGGGGTAGGTGACGTAATAGTTATTTGTGGAGACAAAGTTAACAGCAGTGTGGAAAGTAGTTCTCTTGTCCACAACTTCTGTCAACAGCACAAGACCAAGTCAAACGATGGAGATCTAAACAACACAGATGATGTTCCTCCAGGATTTTCATCTCCACTTTACTCTATAGAATCTTCAAATGCTTCGCCTGCTGCTGTTGATCTACCTCAATCAATTAATGGCCTTTCAAAATGTTTTTCTACTGTAGCTGGGCATCTTCAAGATAAATTTATTTCTCGTTTGCCTGTTTCCTATGGAGTTCCATTGTCTATTGTGCAACAATTTGGGACATCGCTAGCTGAAAATCTGGAAAATTGGATTATTGCTCCAGGAATGCCTTTTCATCCTTTTCCCCCTCTGCCACCGTCTAACCAGGAAAAGAAAACATCTCCTCCTTTTCATGCTCCAATTAAGAAACGGCCTGAGGAAAAACAGTGGGATAACTGTGGTCCTCACACTAGTTATGAAGGTGAAAGTTCTCATGGCTCAGTAGTTTCTAACCAACCATTTTTAGATGGTCCACCCGGAAGCAATCAACACCCAACTAAACGAGCAAGGGGATCGTCCTGCGATCTAGGAAAAAGGCACTTCAGACAGCAAAAGTGGGATAATGCGTCCGATGGCCCTCCTTGGTTACAGAGAAGGAACGACTGGGGATATCTAGAGAATATTCAAGAGGGCCAATATCCTCCCCCGACGTAG 4233 41.2 MVPLINYCFQKNELKDTDGITGFVVPDKLERFNKLASTLRDHIEPLLPKACDSVMHSVMDSCNMDDKHAIGFSTENNIEVAGLENGFVDSCITIIPSMGCQKTDEILQHDGFLTTIIQESECLEEKSCIGSLGQSSLEVAKDCNHITMNSKVDVAKNAMPLERNSNLKEGFITGNSVAEKSTSQELCHPFDVRDDGSFEMMNTQNISVGDATFLSSSRVCDSSGQIDYGSRDNFRVDCVPEVNCADAVASTSGLNNVQRSKSVRKTRTKKSTKRSKGARKAPHSCRNVQIIFEAARRKRTCLSKPSRSTIWGSLSCVTQSSWVSSEVQIQQFQNQELMKGRKGRHNAKQNKNERKRRSKGSKREKCSTSTGCLRLKVKLGKQMDQSFLNIMIPDVDTSLSATATNSSCGTEPYWKTSFDFPKLTKRNECEVLEEATGKHVNSKENPDNLHCTLSSIQLENEKYSPAKNAWVLCDDCQKWRRIPAGLVDSIGQESCTWTCKDNTDKSFADCSIPQEKSNVEINAELEISDASGDDEASRARRTYRLMENQRSKVLQERGYTRIKSNHYLHRTRKSQTIDEIMICHCKAPSNGKVGCGDECLNRMLNIECNRGTCPCGDLCSNLQFQKRNYAKLGRLKCGKKGFGLQLLEDISQGQFLIEYVGEVLDMPAYEARQKEYAMYGHRHFYFMTLNCNEVIDASAKGNLGRFINHSCEPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSPHCRGFIGGDPLNSGVIVQSDSDEDYLEPVMLLEDGKANDVPSASQVLESSQQTDITSKTTSTAHPDIIVQSPSHKNSCIAEDTEPSCLNSMNNKSLSDGCDSNKKFDAVEHKRGSSKRRPLVKTSRKSGFVKKGNVTNDPLHSNKVPVSVNKLLSVKPKKIMEASVEEKLNELLDTCGGISKRKDAARGYLKLLLLTAASGDRVTGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLQMLHNMMKQYRCDFKKIPILRKLLKVLEYLAVREIISSEHINAGPRCLGMESFAESMLSLTEHDDKQVHHIARKFRGRWIHRPLRKFMKEKDDGVKQLVVADAAIHINVGPGCSRSPLNDHIDTPKPRKRKSRWDQPTASIAESRALQPMEQKLESSLSNGVGDVIVICGDKVNSSVESSSLVHNFCQQHKTKSNDGDLNNTDDVPPGFSSPLYSIESSNASPAAVDLPQSINGLSKCFSTVAGHLQDKFISRLPVSYGVPLSIVQQFGTSLAENLENWIIAPGMPFHPFPPLPPSNQEKKTSPPFHAPIKKRPEEKQWDNCGPHTSYEGESSHGSVVSNQPFLDGPPGSNQHPTKRARGSSCDLGKRHFRQQKWDNASDGPPWLQRRNDWGYLENIQEGQYPPPT 1410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33936651 33953623 + Bda002713.1 Bda01g00676 676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00676 1410 SMART PostSET_3 755 771 IPR003616 -
Bda01g00676 1410 Gene3D - 467 525 - -
Bda01g00676 1410 Pfam CW-type Zinc Finger 470 516 IPR011124 GO:0008270
Bda01g00676 1410 MobiDBLite consensus disorder prediction 344 362 - -
Bda01g00676 1410 MobiDBLite consensus disorder prediction 255 284 - -
Bda01g00676 1410 MobiDBLite consensus disorder prediction 337 367 - -
Bda01g00676 1410 Gene3D SET domain 526 787 IPR046341 -
Bda01g00676 1410 SUPERFAMILY SET domain 556 768 IPR046341 -
Bda01g00676 1410 ProSiteProfiles Post-SET domain profile. 755 771 IPR003616 -
Bda01g00676 1410 SMART set_7 630 753 IPR001214 GO:0005515
Bda01g00676 1410 MobiDBLite consensus disorder prediction 1364 1379 - -
Bda01g00676 1410 MobiDBLite consensus disorder prediction 1119 1147 - -
Bda01g00676 1410 MobiDBLite consensus disorder prediction 1294 1393 - -
Bda01g00676 1410 MobiDBLite consensus disorder prediction 262 281 - -
Bda01g00676 1410 MobiDBLite consensus disorder prediction 1309 1326 - -
Bda01g00676 1410 ProSiteProfiles AWS domain profile. 578 628 IPR006560 GO:0005634|GO:0018024
Bda01g00676 1410 Pfam SET domain 641 747 IPR001214 GO:0005515
Bda01g00676 1410 CDD SET_SETD2 629 771 IPR044437 GO:0010452|GO:0046975
Bda01g00676 1410 Pfam AWS domain 593 627 IPR006560 GO:0005634|GO:0018024
Bda01g00676 1410 SMART shorttest3 578 629 IPR006560 GO:0005634|GO:0018024
Bda01g00676 1410 MobiDBLite consensus disorder prediction 1329 1362 - -
Bda01g00676 1410 ProSiteProfiles SET domain profile. 630 747 IPR001214 GO:0005515
Bda01g00676 1410 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 257 1363 - -
Bda01g00676 1410 PANTHER SET DOMAIN PROTEINS 257 1363 - -
Bda01g00676 1410 MobiDBLite consensus disorder prediction 1125 1140 - -
Bda01g00676 1410 ProSiteProfiles Zinc finger CW-type profile. 464 518 IPR011124 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00676 - - - pavi:110766431 1013.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00676 Bda-Chr1:33936651 Bda01g00865 Bda-Chr1:41369489 3.79E-49 dispersed
Bda13g00634 Bda-Chr13:7309780 Bda01g00676 Bda-Chr1:33936651 1.27E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15384 PF00856 SET 1.10E-17 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00676 Bda_Chr01 FPKM 15.096977 14.398598 8.966022 9.000753 33.711613 31.672998 32.855854 6.276611 6.77314