Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00684 ATGGAGATGGTGAGGAACATGCCCGAGTCCTGTTACGAGCTTTCGTTGAAAGACCTGGTGGAGCACCCGATGGTTCTGGCGCGACAGGAAGAAACCACAGCGGAGGAAAGGGATAGTTTAAGCTCGGAATTGTTGTACAGAAGAGAACTCAGCAAGAAGAAGAACCAAAACAATGCGTTAATTCGTAGAGACAGGAGAATTGACAATGGAGGTTTTTACTTAAAAATGATGTTTCCATTATCTCTGGGAGCAACCAGAAAGAAGACGAAGAAGAACGAATCGGGGTTGAATAACGAAGAAAAAATCGCGAGGAGGCCTTCAGTTTCCGATGGCTCTGCAAAAGGAGTGGACAAAGAGTGGTGGAAGAAGAGGACTTCGGTTTCCTGCGACAGCGAGAGCGGTGGTTCTAGCTTAAACAGTGGGAGCGTGAGGAGCAGTGGGAGCAGCAGTACTGGCAGTAGCGGCAGTAGCAGAAGCATCCACAGAACACTTGAGCAGAAAGAAAAGGAAAATCGAACCATGTCCACACAAAGTGGGCCCCGGTCTACTTGTAACCCCTGGAAAACGCGTATCAACGGTCAGATCATTTCCATCAGGACCCACTTGGTACTTGTCAGTGGAAAAAGTCAAACTTCTAGACCTTTGACTATTAATCTTTATCTGACGCAGAGAGAATACAAATATAATGAACCTCCAAACAAGCAAAACCAAGAACCAAAGCTAAAGAAAGTCATCTCCTTTTCCCACATTTTCTCTCTCCCTCATCTTTTTACATATCTACTCTCTCTCACAAAAAGGGCTTTAATTTGGTCTCACAAAGACATGACTAGTAACGCAGCAGCGTGTGCTGAGAGGGCAACCAACGACATGTTAATTGGTCCCGATTGGGCTATTAACATTGAGCTATGTGATATTATTAACATGGAACCTGGGCAAGCAAAGGATGCCTTGAAGATACTTAAAAAGCGCCTGGCCATTAAAAATCCTAAAATACAGCTTCTTGCTCTTTTCGCATTGGAGACTATCAGCAAAAATTGTGGTGAAAATGTATTTCAATTGATCATTGAGCGCGATATTCTTCACGAAATGGTTAAAATAGTAAAGAAGAAGCCCGACTTTCATGTAAAGGAAAAGATATTGAGTTTGATTGATGCATGGCAAGAAGCTTTTGGAGGACCAAGGGGCAGATATCCTCAGTATTATGCAGCCTACAATGAATTAAAGCAAATTTATCTGGATGATATCCGGCCTCCGTTGTCTGATGTGAAAACTGCATTGTTGTGTAACTTTAGATTGTTCTTACATGCATTTGGTAGCTTTATTAATGCTGGTTATAGGTTATTAGGACTGGCAGATGTGTTAATGGAAATGCTTGGTGCTTTGGATCCTAAGAAGCCAGAGAGTGTGAAGGAAGAAGTAATAGTTGATCTCGTAGAGCAGTGCCGGTCGTACCAAACACGTGTGATGCTACTCGTGAACGAGACTGCAGATGAGGAACTTCTGTGTCAGGGATTGGCGTTGAACGACAGTTTGCAGCGTGTTCTTGGTCGACACGATGACATTACCCGTTCTGTCCTTCCTCTCCGCTCCGACTCGCCTTCAACTGAACCATTGAATTCAACTCTATCTTCTTCTCCGCCTCCTTATTCTCGTCCCAAAACCCCCCTCATATCGCCCTTCACTGGCCTTCCTGTTTTTGATGAGCCTCCTCCTAGGGACAGATCCCCAGACCCACTTCCTCCGGCTCCGTGGGACAGTCAGTCAGGTCATGACACTCCGGCTTCACTCCCTCCTCCACCGTCGAGATATAATCAGAGACAGCAGTTTTTTGAGCAAAAACAAGGTCATGGGGGAAGCTCTTCTCATTCAAGCAGTGAATTTGGTTCTTCGTATGACAGCTTAGTCGGACCAACTCAAAGCCTCTCTCTCAATCCTACACCGACCAAACAGGAAAAACCAGAAGACACCCTCTTCAAAGATCTCGTTGATTTTGCAAAAGCCAAGTCATCTTCGCCCTCGAAAACCAACAGATCTAACAGATCTTACTAG 2049 44.85 MEMVRNMPESCYELSLKDLVEHPMVLARQEETTAEERDSLSSELLYRRELSKKKNQNNALIRRDRRIDNGGFYLKMMFPLSLGATRKKTKKNESGLNNEEKIARRPSVSDGSAKGVDKEWWKKRTSVSCDSESGGSSLNSGSVRSSGSSSTGSSGSSRSIHRTLEQKEKENRTMSTQSGPRSTCNPWKTRINGQIISIRTHLVLVSGKSQTSRPLTINLYLTQREYKYNEPPNKQNQEPKLKKVISFSHIFSLPHLFTYLLSLTKRALIWSHKDMTSNAAACAERATNDMLIGPDWAINIELCDIINMEPGQAKDALKILKKRLAIKNPKIQLLALFALETISKNCGENVFQLIIERDILHEMVKIVKKKPDFHVKEKILSLIDAWQEAFGGPRGRYPQYYAAYNELKQIYLDDIRPPLSDVKTALLCNFRLFLHAFGSFINAGYRLLGLADVLMEMLGALDPKKPESVKEEVIVDLVEQCRSYQTRVMLLVNETADEELLCQGLALNDSLQRVLGRHDDITRSVLPLRSDSPSTEPLNSTLSSSPPPYSRPKTPLISPFTGLPVFDEPPPRDRSPDPLPPAPWDSQSGHDTPASLPPPPSRYNQRQQFFEQKQGHGGSSSHSSSEFGSSYDSLVGPTQSLSLNPTPTKQEKPEDTLFKDLVDFAKAKSSSPSKTNRSNRSY 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33988040 33997310 - Bda002720.1 Bda01g00684 684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00684 682 MobiDBLite consensus disorder prediction 668 682 - -
Bda01g00684 682 MobiDBLite consensus disorder prediction 526 682 - -
Bda01g00684 682 Pfam VHS domain 283 408 IPR002014 GO:0035091|GO:0043130
Bda01g00684 682 MobiDBLite consensus disorder prediction 85 188 - -
Bda01g00684 682 SUPERFAMILY GAT-like domain 450 522 - -
Bda01g00684 682 MobiDBLite consensus disorder prediction 86 126 - -
Bda01g00684 682 Gene3D - 279 410 IPR008942 -
Bda01g00684 682 MobiDBLite consensus disorder prediction 127 160 - -
Bda01g00684 682 CDD GAT_GGA_like_plant 452 521 - -
Bda01g00684 682 MobiDBLite consensus disorder prediction 527 547 - -
Bda01g00684 682 Gene3D - 446 526 IPR038425 -
Bda01g00684 682 Pfam GAT domain 451 523 IPR004152 GO:0035091|GO:0043130
Bda01g00684 682 SMART VHS_2 279 411 IPR002014 GO:0035091|GO:0043130
Bda01g00684 682 ProSiteProfiles GAT domain profile. 435 523 IPR004152 GO:0035091|GO:0043130
Bda01g00684 682 PANTHER TOM1-LIKE PROTEIN 4 275 410 - -
Bda01g00684 682 PANTHER TOM1-LIKE PROTEIN 4 564 678 - -
Bda01g00684 682 PANTHER TOM1-LIKE PROTEIN 4 449 532 - -
Bda01g00684 682 SUPERFAMILY ENTH/VHS domain 282 412 IPR008942 -
Bda01g00684 682 MobiDBLite consensus disorder prediction 601 651 - -
Bda01g00684 682 PANTHER TOM1-LIKE PROTEIN 275 410 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bda01g00684 682 PANTHER TOM1-LIKE PROTEIN 564 678 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bda01g00684 682 PANTHER TOM1-LIKE PROTEIN 449 532 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bda01g00684 682 CDD VHS 279 409 - -
Bda01g00684 682 ProSiteProfiles VHS domain profile. 286 409 IPR002014 GO:0035091|GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00684 - - - han:110903992 373.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00684 Bda-Chr1:33988040 Bda11g00835 Bda-Chr11:8250639 7.02E-83 dispersed
Bda01g00684 Bda-Chr1:33988040 Bda01g00944 Bda-Chr1:42879492 2.40E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00684 Bda_Chr01 FPKM 0.772472 0.948485 1.059951 0.793585 3.618781 4.505363 3.244807 0.0 0.0