Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00688 ATGACTCGGGGAAGAGGCAGTGCAGGCCGGATCGTCGGGTTCGGTTCAGTTATTGCCCTAGCGTGGCTGCTTGCTCAGCTGCAAAATGCCGATGCAGCCGTCTACACCGTGGGAGGCCCTTCTGGGTGGACTTTTAACGTTGATTCCTGGCCTCAGGGGAAGCGTTTCAGAGCCGGCGACTTCCTCAAATTCAACTACGATTCTTCGAATCACAACGTGGTTGTTGTGGACAAAGCTGGGTACGCAAACTGCAGAACTCCAGGTGGATCGAAGGTCTATAAATCTGGGAATGATCAAGTGAAGCTTGTGAAGGGCCAAAACTACTTCATCTGCAACTTTCCTGGGCACTGCGAATCTAAGATGAAGATTGCTGTTAATGCCCTTTAA 387 50.9 MTRGRGSAGRIVGFGSVIALAWLLAQLQNADAAVYTVGGPSGWTFNVDSWPQGKRFRAGDFLKFNYDSSNHNVVVVDKAGYANCRTPGGSKVYKSGNDQVKLVKGQNYFICNFPGHCESKMKIAVNAL 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34031524 34032017 - Bda002724.1 Bda01g00688 688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00688 128 Gene3D - 33 127 IPR008972 -
Bda01g00688 128 ProSiteProfiles Phytocyanin domain profile. 33 128 IPR003245 GO:0009055
Bda01g00688 128 Pfam Plastocyanin-like domain 43 120 IPR003245 GO:0009055
Bda01g00688 128 PANTHER BLUE COPPER PROTEIN 15 126 IPR039391 GO:0009055
Bda01g00688 128 PANTHER BASIC BLUE-LIKE PROTEIN 15 126 - -
Bda01g00688 128 SUPERFAMILY Cupredoxins 33 127 IPR008972 -
Bda01g00688 128 CDD Plantacyanin 33 127 IPR041844 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00688 - - - cmo:103485741 184.111
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00688 Bda-Chr1:34031524 Bda08g00745 Bda-Chr8:9130548 4.04E-43 dispersed
Bda01g00688 Bda-Chr1:34031524 Bda08g00774 Bda-Chr8:10181270 3.50E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00688 Bda_Chr01 FPKM 1.83369 2.605396 3.699471 3.279782 8.093859 6.774106 8.641682 4.497093 5.606485