Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00691 ATGCCTTATCGCGGCCGAGATGACGAAGACGAAGATATCGAGCCTGAGGAGGACGAGTATGAAGATGACCGCGAACAGCTTCTTGATGAGGAGGATGAAGTCGACGGAAGGGACGACCGTTCTGGCCGCAAGAGGAGGAGATCCAGCTTTATAGACGACGTTGCGGAGGAGGATGACGAAGAAGAAGAGGAGGAGGAGGACGACGACGATGATGAGGATTATGGCGGTGCTGGAAATCGGAGGCGCCGCCCTAAGCGCCCTATGGGCTCTCAGTTCTTAGATATCGAGGCTGAGGTCGATTCGGACGATGAAGAGGAAGAGGAGGATGGGGAAGACGACTTCATAGTTGATGTTGGAGGTGATATGCCTGATGAAGATGATGGTAGAAGGATGCATCGTCGACCTTTATTATCACGAGAGGATGAACAAGAAGACGTTGAAGCTTTGGAGAGGAGGATTCAGGCTAGATATTCAAAAACAAGGGACACTGAGTATGATGAGGAAACTACAGATGTTGAACAGCAAGCTCTTTTACCATCTATTAGAGATCCTAAGTTGTGGATGATCAAGTGTGCGATTGGCCATGAGCGCGAGGCAGCTGTTTGTCTGATGCAAAAATGTATTGATAGGGGGTCTGAATTGCAAATCAGGTCTGTCATTGCTCTCGATCATCTCAAGAACTACATATACATTGAAGCGGACAAAGAAGCTCATGTTAGGGAGGCATGCAAAGGTCTCCGCAATATATATTCCCAAAAAATTATGCTAGTTCCAATTAGAGAAATGACAGATGTTCTCTCAGTTGAAAGCAAATCCATTGATCTTTCTAGAGATACCTGGGTTAGGATGAAGATTGGTACCTACAAAGGAGATCTTGCTAAGGTAATGGATGTGGATAATGTGCGGCAAAGAATTACTGTGAAATTGATTCCACGGATAGACTTGCAAGCTCTTGCTAATAAATTGGAAGGTAGAGAAGTTGCGAAGAAGGCATTTGTTCCCCCACCACGTTTTATGAATGTTGATGAAGCAAGAGAATTGCATATCCGCGTGGAGCGTAGACGAGATGCTATGACTGGAGAGTACTTTGAGAATATAGGTGGAATGCAATTCAAAGATGGTTTCTTATATAAAACAGTATCGACAAAGTCAATAAGTGCGCAGAACATTAAACCAACTTTTGATGAACTCGAGAAATTTAGAAAGCCTGGAGAAAATGGAGATGGAGATGTAGCTAGTTTATCTACTTTATTTGCTAACAGAAAAAAGGGGCATTTTATGAAAGGGGATGCGGTAATTGTTGTGAAGGGGGATTTAAAAAACTTGAAAGGATGGGTTGAGAAAGTGGAAGAAGAAAATGTCCATATCAGACCTGAAATGAAAGGGCTCCCAAAAACCCTTGCTGTGAATGAAAAAGAACTCTGCAAGTATTTTGAGCCTGGGAATCATGTGAAGGTTGTTTCTGGAGCTCAAGAAGGTGCAACTGGTATGGTTGTTAAGGTTGAACAACATGTGCTTATTATATTATCTGATACGACGAAGGAACATATCCGTGTATTTGCTGATGATGTTGTGGAGAGCTCTGAGGTAACATCTGGTATCACAAGGATTGGAGACTTTGAGCTGCATGATCTCGTGTTACTGGATAATATGAGCTTCGGCGTTATAATACGAGTAGAAAGTGAAGCATTTCAGGTTTTGAAGGGAGTTCCTGATAGACCGGAGGTTGATATGATTAAGTTGAGGGAGATAAAATGTAAGATTGATAAAAAGATAAGTGTTCAAGACCGGTTCAAGAACACTATTTCAGCAAAAGATGTCGTGAGAATTCTGGAGGGTCCATGTAAAGGAAAGCAAGGACCTGTGGAGCACATATACAGGGGAGTTTTGTTCATATATGATCGTCACCATCTTGAGCATGCAGGATTTATTTGTGTCAAGGCTCAGTCGTGTGTGGTAGTTGGTGGATCCCGAGCAAATGGAGATAGAAATGGCGATTCTTCAAGATTTGCCAATTTCAAAACTCTACCCCGCATGCCACAATCTCCTAAAAGATTCAACAGAGGTGGCCCTCCATCTGGAGGGCGAAATAGAGGTGGTCGAGGTCATGATGGCTTGGTGGGCACTACAGTGAAGATTCGGCAGGGCTCTTATAAAGGATACCGTGGACGTGTTGTAGAAATCAAAGGTCAATCTGTTCGGGTTGAATTGGAGTCACAAATGAAGGTTGTGACAGGCAAGTTGGCTATATTTGACCGTAACTTTATTTCTGATAATGTGGTTGTCTCAACGCCATACCGGGATACACCGAGATATGGTATGGGTAGTGAAACTCCTATGCATCCTTCTCGAACCCCGCTGCATCCTTATATGACCCCTATGAGAGATTCGGGAGCAACTCCTATTCATGATGGCATGAGGACACCAATGCGTGATCGGGCATGGAATCCCTATGCCCCGATGACACCATTAAGGGATAACTGGGAGGACGGAAACCCTGGGTCTTGGGGATCCAGTCCACAGTACCAGCCAGGGAGCCCTCCTTCGCGGACATTTGAAGCACCAACTCCTGGTTCTGGTTGGTCTAACACTCCGAGTGGAAGTTATAGTGAAGCTGGAACGCCGAGGGACAGTAATTCGGCTTATGGTAATGCTCCAAGCCCGTATTTGCCATCTACTCCTGGTGGCCAGCCTATGACTCCAAACTCTGCTTCCTATCTTCCTGGTACTCCTGGGGGGCAGCCAATGACACCAGGCACTGGAGGCTTAGATGCCATGTCTCCTGTCATTGGTGATGATCATGAAGGACCGTGGTTCATGCCGGATATATTAGTTAACGTTCGTAGATCTGGGGATGACATCATCATTGGAGTTGTTAGAGAAGTGCTTCCGGATGGCTCTTGTAGAGTAATCAGTAATGGAGAGACGGTGAATGCCCTGCCCAATGAAATGGAGGCAGTGATGCCGAGAAAGTCCGACAGAGTGAAGATAATGGGCGGGGCTCTGCGTGGGGCGACTGGGAAGTTGATCGGTATCGATGGAACGGACGGAATAGTTAAGACAGATTCATTAGAAGTTAAGATATTGGACTTGACAATGCTGGCCAAAGTTGCTCAGCATTGA 3123 45.31 MPYRGRDDEDEDIEPEEDEYEDDREQLLDEEDEVDGRDDRSGRKRRRSSFIDDVAEEDDEEEEEEEDDDDDEDYGGAGNRRRRPKRPMGSQFLDIEAEVDSDDEEEEEDGEDDFIVDVGGDMPDEDDGRRMHRRPLLSREDEQEDVEALERRIQARYSKTRDTEYDEETTDVEQQALLPSIRDPKLWMIKCAIGHEREAAVCLMQKCIDRGSELQIRSVIALDHLKNYIYIEADKEAHVREACKGLRNIYSQKIMLVPIREMTDVLSVESKSIDLSRDTWVRMKIGTYKGDLAKVMDVDNVRQRITVKLIPRIDLQALANKLEGREVAKKAFVPPPRFMNVDEARELHIRVERRRDAMTGEYFENIGGMQFKDGFLYKTVSTKSISAQNIKPTFDELEKFRKPGENGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTSGITRIGDFELHDLVLLDNMSFGVIIRVESEAFQVLKGVPDRPEVDMIKLREIKCKIDKKISVQDRFKNTISAKDVVRILEGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICVKAQSCVVVGGSRANGDRNGDSSRFANFKTLPRMPQSPKRFNRGGPPSGGRNRGGRGHDGLVGTTVKIRQGSYKGYRGRVVEIKGQSVRVELESQMKVVTGKLAIFDRNFISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYAPMTPLRDNWEDGNPGSWGSSPQYQPGSPPSRTFEAPTPGSGWSNTPSGSYSEAGTPRDSNSAYGNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGDDHEGPWFMPDILVNVRRSGDDIIIGVVREVLPDGSCRVISNGETVNALPNEMEAVMPRKSDRVKIMGGALRGATGKLIGIDGTDGIVKTDSLEVKILDLTMLAKVAQH 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34054324 34062678 + Bda002727.1 Bda01g00691 691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00691 1040 Pfam Early transcription elongation factor of RNA pol II, NGN section 185 266 IPR005100 -
Bda01g00691 1040 Gene3D - 420 477 IPR014722 -
Bda01g00691 1040 Pfam Spt5 transcription elongation factor, acidic N-terminal 92 179 IPR022581 -
Bda01g00691 1040 Gene3D - 274 316 IPR014722 -
Bda01g00691 1040 SUPERFAMILY Translation proteins SH3-like domain 469 528 IPR008991 -
Bda01g00691 1040 PANTHER SUPPRESSOR OF TY 5 33 1038 IPR039659 GO:0006357|GO:0032784
Bda01g00691 1040 SMART kow_9 425 452 IPR005824 -
Bda01g00691 1040 SMART kow_9 274 301 IPR005824 -
Bda01g00691 1040 SMART kow_9 601 628 IPR005824 -
Bda01g00691 1040 SMART kow_9 988 1015 IPR005824 -
Bda01g00691 1040 SMART kow_9 477 504 IPR005824 -
Bda01g00691 1040 SMART kow_9 704 731 IPR005824 -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 9 35 - -
Bda01g00691 1040 SMART nusgn_4 183 269 IPR006645 GO:0140673
Bda01g00691 1040 PIRSF Spt5 3 1040 IPR017071 GO:0006357|GO:0032784
Bda01g00691 1040 Pfam KOW motif 480 507 IPR005824 -
Bda01g00691 1040 Gene3D - 688 750 IPR014722 -
Bda01g00691 1040 Gene3D - 480 529 IPR014722 -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 832 887 - -
Bda01g00691 1040 CDD KOW_Spt5_6 982 1038 IPR041980 -
Bda01g00691 1040 CDD KOW_Spt5_2 426 476 IPR041975 -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 122 144 - -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 800 927 - -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 1 144 - -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 896 910 - -
Bda01g00691 1040 CDD KOW_Spt5_5 703 745 IPR041978 -
Bda01g00691 1040 CDD NGN_Euk 185 267 IPR039385 -
Bda01g00691 1040 CDD KOW_Spt5_4 605 647 IPR041977 -
Bda01g00691 1040 Coils Coil 139 159 - -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 663 707 - -
Bda01g00691 1040 ProSitePatterns Ribosomal protein L24 signature. 429 446 IPR005825 GO:0003735|GO:0005840|GO:0006412
Bda01g00691 1040 MobiDBLite consensus disorder prediction 36 53 - -
Bda01g00691 1040 CDD KOW_Spt5_1 278 315 IPR041973 -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 96 121 - -
Bda01g00691 1040 Gene3D - 165 267 IPR036735 GO:0006355
Bda01g00691 1040 CDD KOW_Spt5_3 477 527 IPR041976 -
Bda01g00691 1040 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 33 1038 - -
Bda01g00691 1040 MobiDBLite consensus disorder prediction 54 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00691 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1654.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00691 Bda_Chr01 FPKM 2.166985 4.006216 4.807907 3.263958 4.575823 5.108582 4.29086 10.228565 10.042211