Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00693 GCTGCTGTTGCATGGGAGGCTGGAAAGCCACTTGTAATTGAAGAAGTTGAGGTGGCACCACCACAAGCAAACGAAGTTCGTTTGAAGATTCTCTTCACTTCCCTTTGCCATACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAAACCCATTGTTTCCTCGCATATTCGGCCATGAAGCTGGGGAAATTGTGGAAAGCATTGGAGACGGTGTGACTGATCTCGCACCGGGGGATCACGTGCTCCCGGTGTTCACCGGAGAGTGCAAAGAATGCTGCCACTGTCAGTCTGAGGAGAGCAACATGTGCGACCTTCTTCGAATCAACACCGACCGAGTAGTGATGCTCAATGACGGCAAGCAAAGATTCTCGATCAATAGACAGCCAATTTACCACTTTGTTGGAACCTCTACATTTAGTGAATATACTGTTGTTCATGTTGGCTGTGTTGCTAAAATCAACCCGATAACTCCGCTCGATAAAGTCTGCATTCTTAGCTGCGGAATTTCGACAGGTCTTGGTGCAACTTTGAATGTTGCAAAACCCAAAAAAGGTTCCTCCGTCGCTGTTTTTGGATTAGGCGCTGTTGGATTAGCTGCTGCTGAAGGTGCGAGAATAGCAGGGGCGTCGAGAATCATCGGCATCGATTTGAATACCAGTCGATTCGAAGAAGCAAAGAAGTTCGGCGTTAATGAGTTTGTGAATCCGAAGAACCACGACAAACCCGTTCAACAGGTGATAGCTGAGATGACAGATGGAGGAATTGATCGGAGTGTTGAGTGCACCGGAAGCATCCAGGCTATGATCTCGGCCTTCGAATGCGTCCACGATGGATGGGGATTGGCTGTATGGCGACCATATTTACTTGGCCGTCACTTTATAGTACGCACAGACCAACGCAGTCTCAAGTATCTCTTAGAGCAACGTTTGGTGAATCCGGAGCATCAAAAATGGTTAACTAAGATTATGGGTTATGACTTCGAAATTCAGTACCACGCTGGATTGGAGAACAAAGCAGCTGATGCCCTTTCTCGTCGGCCTCCACAGTCCACACTCACCACTTTATCAATCACAACCCTCTTGCCATGGAACGAAATCCAGGCGGAAATCTTGGCTGACAAAGACTTATCACTTATACTAGATCAGCTTTCCCAGCAAACCGAGGGTCCGAAAGGCTATTCCCTACAGAATGGACGGTTATACTACAAGGGGCGGCTAGTTTTAGCAGCAAATTCAGCCTTAATTCCACGTTTGCTTCATGAGTTTCACGGCTCAGTGGTGGGTGGTCATTCCGGTGGTTTCAAAACATACCAACGGCTTGCTGTTGATTTTTTTTGGAAAGGAATGCGCGCTAGCGTGAAACAATTTGTCGCTGCATGTGGAGTTTGCCAGCGTAATAAATACCAAGCTCTATCCCCAGCCGGGCTTCTCCAACCTCTACCAATTCTGGTATCAGTTTGGGACGATATTTCCATGGATTTTATTGAAGGATTACCTCAATCAGGTGGATTTAATGCTATTTTGGTAGTTGTTGACCGACTGAGTAAATATGCACACTTCATTGCTTTGAAACATCTTTTTGCAGCTCAGTCAGTGGCTTTGGTGTTTATCAAGGAAGTAGTTCGTCTGCATGGGTTTCCTCGGTCTATTATCAGTGATCGCGACAAGGTCTTCCTTAGTGTTTTCTGGAAAGAACTATTTAAGTTACAAGGTACATCTTTGAGATACAGCTCAGCTTATCACCCTCAGACTGACGGTCAGACCGAAGTGATGTCCCCTTTCAAAGCAGTTTATGGTCGAGAGCATCCGCCATTAATTCGGGTAGGAACGGGTGAATCCGTGGTTCAATCAATCGAGGACTTGTTACAGGAAAGGGATGCAATTGTTATAGCACTACAAAATCACCTATCAAACGCCCAAGCCCGTATGAAAGAGGTGGCGGATGGCAAGCGGCGTGAGGTTTGTTTTGCCGAAGGTGATTGGCTACGTCGGGCGATAGGGGACCAAGGAGTACATACTCCCTTACCGACAACTCTGTCAGAAGAATTGGAGCTGAATTTGGAACCACAAGCCATTTTAAACGTGCGAGCAAGTGCGGATGGTATTCCAACTAGAGGGGAAGTCCTTGTTCATTGGCAGGGTCAACCCGTCGAGGAGGCCACGTGGGAATTTGTGGACGTCATCGCCGCGCAATTTCCCCATTTCGACCTTGAAGACAAGGTGAAAGTTTGGGCAGCGGGTACTGTTAGGAAACCACCAATCCGATTCACGTATTCAAGGAGGCACAAAGACATTCTGAAGAATGGGGAGGCAAAATAG 2316 47.15 AAVAWEAGKPLVIEEVEVAPPQANEVRLKILFTSLCHTDVYFWEAKGQNPLFPRIFGHEAGEIVESIGDGVTDLAPGDHVLPVFTGECKECCHCQSEESNMCDLLRINTDRVVMLNDGKQRFSINRQPIYHFVGTSTFSEYTVVHVGCVAKINPITPLDKVCILSCGISTGLGATLNVAKPKKGSSVAVFGLGAVGLAAAEGARIAGASRIIGIDLNTSRFEEAKKFGVNEFVNPKNHDKPVQQVIAEMTDGGIDRSVECTGSIQAMISAFECVHDGWGLAVWRPYLLGRHFIVRTDQRSLKYLLEQRLVNPEHQKWLTKIMGYDFEIQYHAGLENKAADALSRRPPQSTLTTLSITTLLPWNEIQAEILADKDLSLILDQLSQQTEGPKGYSLQNGRLYYKGRLVLAANSALIPRLLHEFHGSVVGGHSGGFKTYQRLAVDFFWKGMRASVKQFVAACGVCQRNKYQALSPAGLLQPLPILVSVWDDISMDFIEGLPQSGGFNAILVVVDRLSKYAHFIALKHLFAAQSVALVFIKEVVRLHGFPRSIISDRDKVFLSVFWKELFKLQGTSLRYSSAYHPQTDGQTEVMSPFKAVYGREHPPLIRVGTGESVVQSIEDLLQERDAIVIALQNHLSNAQARMKEVADGKRREVCFAEGDWLRRAIGDQGVHTPLPTTLSEELELNLEPQAILNVRASADGIPTRGEVLVHWQGQPVEEATWEFVDVIAAQFPHFDLEDKVKVWAAGTVRKPPIRFTYSRRHKDILKNGEAK 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34098353 34105351 + Bda002730.1 Bda01g00693 693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00693 771 Gene3D - 171 282 - -
Bda01g00693 771 Gene3D - 376 466 - -
Bda01g00693 771 Pfam Alcohol dehydrogenase GroES-like domain 24 149 IPR013154 -
Bda01g00693 771 Pfam Zinc-binding dehydrogenase 194 277 IPR013149 -
Bda01g00693 771 Pfam Integrase zinc binding domain 411 467 IPR041588 -
Bda01g00693 771 SUPERFAMILY GroES-like 1 174 IPR011032 -
Bda01g00693 771 PANTHER ALCOHOL DEHYDROGENASE 1 282 - -
Bda01g00693 771 SUPERFAMILY Chromo domain-like 666 733 IPR016197 -
Bda01g00693 771 Gene3D - 8 170 - -
Bda01g00693 771 ProSiteProfiles Integrase catalytic domain profile. 476 649 IPR001584 GO:0015074
Bda01g00693 771 Pfam RNase H-like domain found in reverse transcriptase 278 324 IPR041373 -
Bda01g00693 771 Gene3D - 483 622 IPR036397 GO:0003676
Bda01g00693 771 SUPERFAMILY DNA/RNA polymerases 273 330 IPR043502 -
Bda01g00693 771 CDD RNase_HI_RT_Ty3 278 346 - -
Bda01g00693 771 PANTHER ALCOHOL DEHYDROGENASE 1 1 282 - -
Bda01g00693 771 SUPERFAMILY Ribonuclease H-like 479 590 IPR012337 -
Bda01g00693 771 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 284 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00693 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - jre:109005403 491.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00693 Bda-Chr1:34098353 Bda01g01384 Bda-Chr1:49738048 5.26E-128 dispersed
Bda08g00760 Bda-Chr8:9722367 Bda01g00693 Bda-Chr1:34098353 8.22E-11 dispersed
Bda11g01523 Bda-Chr11:40521535 Bda01g00693 Bda-Chr1:34098353 5.51E-57 dispersed
Bda13g01206 Bda-Chr13:19352657 Bda01g00693 Bda-Chr1:34098353 1.93E-11 dispersed
Bda14g00991 Bda-Chr14:8071119 Bda01g00693 Bda-Chr1:34098353 4.18E-15 dispersed
Bda01g00693 Bda-Chr1:34098353 Bda13g01537 Bda-Chr13:38607656 2.44E-178 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000653 9 3 6 2 0 2 0 2 2 3 6 0 0 1 2 0 0 0 0 0 3 1 2 10 2 1 2 2 1 0 62