Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00703 ATGCCAGGATTGACTTGCAACGCCTGCAACAGGGAATTCATAGACGACGCGGAGCAAAAGCTCCATTACAAGTCCGAATGGCACCGCTATAATCTTAAGCGAAAGGTAGCTGGTGTTCCTGGTGTGACAGAAGCTTTATTTCTAGCTAGACAATCTGCAGTTTCACAGGAGAACATGAAGTCTAATGAAACCCCAATGTTGTACTCTTGTGGTCTCTGTGGAAAAGGATACAGAAGTTCCAAAGCTCATGCTCAGCATCTTAAATCAAGAAGTCATATAACACGAGCTTCTCAAGGATCCAATGAAGAAGATGAGACGGCTGTAATCAAGCCACTTGTTCGTAGAACCTCAAATAAGATTCCCCAACAAAAAGGATATAATGAAGAAAGTGATGAGAGTGAAGATGAGTGGGAGGAGGTTGACCCAGATGAAGATTTGGTTGGTGAGGCCACACAGTCCATGACTGGTATGAAGATGAAAGATGTTGATGGTGAGATGGATGACAACGATGACATTGAGGAGTTGGATCCATCGTGCTGCTTTATGTGTGACCTGGACCATGACACTATTGAGAGTTGTATGGTTCACATGCACAAGCAGCATGGTTTCTTCATTCCCGATGTCGATTATTTGAAGGACCCAGCAGGCCTGCTTGCTTATCTTAGCCTGAAGGTGAAGAGGGATTTCATGTGCCTCTACTGTAATGATAGGTGTCTTCCTTTTAATAGCTTGGAAGCAGTTAGAAAGCACATGACAGCAAAAAGCCACTGCAAAGTGCACTATGGTGATGATGATGAGGATGAGGACGCAGATTTGGAAGACTTCTACGATTACAGTAGCAGTTATGTGGATGAGAAAGGCAAAAAACTGGTAGTGGCTGGCGACTCGGTCAACTCTGTAGAACTTGGGAGTGGTGGGTCGGAGCTCATCATTACTAGAACATCTGATCGTGGAATCCTTACCAAAACACTTGGTTCCCGGGAGTTTTTGCGCTATTATCGTCAGAAACCACGCCCTATGAATTACACACCTCTAACTGCTGCATTGGCTTCTAGGTACAGGAGCATGGGATTGGCAACGATACAATCAAGGGAAGGAATGGTGAGGATGAAAGTGATGAAAGCTATGAATAGATCAGGAGTGGAAGCCATGCGCAACAAGATTGGAATGAAGAGCAACGTGATCAGAAACCTGCCTAAGAATGTTCCTTATTGA 1215 44.53 MPGLTCNACNREFIDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSAVSQENMKSNETPMLYSCGLCGKGYRSSKAHAQHLKSRSHITRASQGSNEEDETAVIKPLVRRTSNKIPQQKGYNEESDESEDEWEEVDPDEDLVGEATQSMTGMKMKDVDGEMDDNDDIEELDPSCCFMCDLDHDTIESCMVHMHKQHGFFIPDVDYLKDPAGLLAYLSLKVKRDFMCLYCNDRCLPFNSLEAVRKHMTAKSHCKVHYGDDDEDEDADLEDFYDYSSSYVDEKGKKLVVAGDSVNSVELGSGGSELIITRTSDRGILTKTLGSREFLRYYRQKPRPMNYTPLTAALASRYRSMGLATIQSREGMVRMKVMKAMNRSGVEAMRNKIGMKSNVIRNLPKNVPY 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34321358 34323906 + Bda002741.1 Bda01g00703 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00703 404 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Bda01g00703 404 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Bda01g00703 404 SUPERFAMILY beta-beta-alpha zinc fingers 166 213 IPR036236 -
Bda01g00703 404 PANTHER ZINC FINGER PROTEIN 622 1 404 IPR040025 -
Bda01g00703 404 SUPERFAMILY beta-beta-alpha zinc fingers 68 101 IPR036236 -
Bda01g00703 404 MobiDBLite consensus disorder prediction 85 142 - -
Bda01g00703 404 PANTHER ZINC FINGER PROTEIN-RELATED 1 404 - -
Bda01g00703 404 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Bda01g00703 404 SMART c2h2final6 68 92 IPR013087 -
Bda01g00703 404 SMART c2h2final6 4 28 IPR013087 -
Bda01g00703 404 SMART c2h2final6 229 256 IPR013087 -
Bda01g00703 404 Pfam C2H2 type zinc-finger (2 copies) 180 281 IPR041661 -
Bda01g00703 404 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
Bda01g00703 404 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Bda01g00703 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15389 PF12756 zf-C2H2_2 2.00E-25 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00703 K14816 - zju:107420801 629.017