Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00716 ATGGCTTCCGTCCTTGGAGAGAAGGCGTCGGTGAAAGCGGACGGGGACGAGGGGAAACAGGTGATGGTCGTGGACGGCCCGGATATTTTGGAAGCGGAGGTTGCGATGCTGCGTGGTCGATGGGAGCTGGCTTCCGTTATCAATTTCTTAACAGTCTTTGAACGAGTGATCGGGAGTGACTTGAAGATATCCGCGGAGGAGATAGAACTGGGGTTAATAAAGCCGAACGAATCTCTCTCTCGGCTTCACATTGCTCTCTTGAAGGGAATACCACCTGTCAGTAAAACATCAAATTTTTCTGATGCATGGATTACCATAGTTTGTAAGAAGCTTGCTATGTGGTGGCCATGGGTATGTCATAGTAAATTTTATCTTTCTCACAGAAACTTGGAGGAAATACATAAGTACAAGGAGCTCGATCCAAATCATCGGTTGTTGATTTTGAAGGCGCTTTGTGAAGTGCGAGCAGAGCAAGATGATGTCGTCTCTCACATTAATGTTTCCCTGAAAGAAGGATGTCAGATTTCTTCTTTTCGCAAACTTAAGATTGGTGATGCTGCTGCAAATGGAACTTCCTATTGGTACGACGGAAATGCAGTTCTCGGTTATAGGTTGTATCGGGAAGTGACAACATTCAAGCCAAAGGATAAAGTTAAGATAAAAGAGCGTGTAAACTTACCAGCTATAAAATTTCAGTGGGAAACACTTGCGACAAATATTGATGAATTTCGTAGAGCAATGAACGAGCTCTTGTCTAGCAATGTTACTCATGAAGTAACAGTTGGTAAGACCATAGAAGCTGATGCCCTTCCGGTTCTCGAGAAACTTCAGAAGAAGAAAGAAATGGCACTAAAAAGAAAGCAAAAGGAAGACATGCTCTTGAATAATTTTAGAAACTCCTGCAATGCTGGGACGACACGCTCTTGTCGCAATCGTAGACAAGTCTGCTACACATTTGGTAACTTTGTTGATCATAACTTTGAATTGTGGTTCAGAAAAAGGAAAACTGAGGAACAAGGGAAAGGAGACAAAGGCATTGATTCAAGTGCAGAACCTGACACAGCCACGGAATCAGAACACGATTCTCTCAAAGGAGGATCTGAACCTGAGAGTAACATGCTTAAAGAAGATGGCTGTGAGGATTACGACACCGAGGATGGTAACTATGGTGATGAAGAGGATGATGAAAACAGTCAAGGTTGTGACTCAGCCAATGCAACAGAAAATGAAAATTCAACTCTTCATTCTAAGAACTCTAGTTCTGATGATATGGATCTCCGGAATCAAAATAGTAGATATCCTGTCCGAGAAAGTAGAAACTTGGTAGCAAAGAATAGGCTGAGACAAAGACCCACTCTCAACACCGCCCTTGATTCCATTGTCGTACCCGATTCAGAAGACGAAAAGTTGTAA 1413 42.82 MASVLGEKASVKADGDEGKQVMVVDGPDILEAEVAMLRGRWELASVINFLTVFERVIGSDLKISAEEIELGLIKPNESLSRLHIALLKGIPPVSKTSNFSDAWITIVCKKLAMWWPWVCHSKFYLSHRNLEEIHKYKELDPNHRLLILKALCEVRAEQDDVVSHINVSLKEGCQISSFRKLKIGDAAANGTSYWYDGNAVLGYRLYREVTTFKPKDKVKIKERVNLPAIKFQWETLATNIDEFRRAMNELLSSNVTHEVTVGKTIEADALPVLEKLQKKKEMALKRKQKEDMLLNNFRNSCNAGTTRSCRNRRQVCYTFGNFVDHNFELWFRKRKTEEQGKGDKGIDSSAEPDTATESEHDSLKGGSEPESNMLKEDGCEDYDTEDGNYGDEEDDENSQGCDSANATENENSTLHSKNSSSDDMDLRNQNSRYPVRESRNLVAKNRLRQRPTLNTALDSIVVPDSEDEKL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34439843 34443518 - Bda002754.1 Bda01g00716 716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00716 470 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 23 322 - -
Bda01g00716 470 PANTHER REMODELING AND SPACING FACTOR 1 23 322 IPR028938 GO:0006355|GO:0031213
Bda01g00716 470 MobiDBLite consensus disorder prediction 338 378 - -
Bda01g00716 470 MobiDBLite consensus disorder prediction 379 399 - -
Bda01g00716 470 MobiDBLite consensus disorder prediction 338 452 - -
Bda01g00716 470 Coils Coil 273 293 - -
Bda01g00716 470 MobiDBLite consensus disorder prediction 400 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00716 - - - mcha:111012575 426.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00716 Bda-Chr1:34439843 Bda06g00560 Bda-Chr6:7876566 3.74E-79 dispersed
Bda01g00716 Bda-Chr1:34439843 Bda15g00588 Bda-Chr15:9084522 4.53E-81 transposed
Bda01g00716 Bda-Chr1:34439843 Bda15g00584 Bda-Chr15:9052767 5.76E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g394 Blo01g01356 . Bda01g00716 . . . . Bma01g02144 . . Cma01g01543 . Car09g00435 . . . Cpe06g00371 . . . . . . . . . . . . . . . Cone7ag1744 . . Lsi04g02172 Csa03g04378 Chy04g00324 . . . . . . . . . . Cmo01g01593 Cmo09g00497 . . Car01g01172 . . . . . . . . . . . . . . . . . . . . Cme04g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010520 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00716 Bda_Chr01 FPKM 7.455357 7.505915 5.534993 6.311829 5.824287 5.232353 7.159 6.318278 5.041993