Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00717 ATGACGACTTTGTCGTCGTCGGAAACGAGGTCGCCGTTTCCGCTGCTTTTCAGGAGACACTCAAGCGGCGAGATAAGAAACTTAACGTCGGTTTCGAGTAGTCTCTTGCCGGCGTTCGGAACAGTGGTAGACGAAGGATATTTACACCTCAGAAAGTTCATCATTGTTCCCTATGATCGTAGATATCGCAGGTTATGGCAGACCTTTCTGGTTGTACTAGTGGTGTACTCAGCATGGGCATCCCCTTTCGAGCTAGCTTTCAAAAAAGTGGCAACTGGGTCTCTCCTGCCCGTTGATTTAGTTGTCGATGGCTTCTTTGCCATTGATATAGTTTTGACTTTCTTTGTGGCATACTTGGATAAATCAACCTATCTCCTCGTTGATGATCATAAGAAGATAGCAAGAAGATACCTTACTAGCCTGTGGTTTCCTATGGACGTAGCCTCAACTCTTCCATATCAAATAATATACAGAATTTTCACCGGAGACTTGCACAATGGCGAGACCTTTGGTTTCCTCAACTTTCTCCGCTTTTGGCGACTCAGGCGTGTTAGTCAGCTCTTTGCTAGGCTAGAGAAAGATACGCGCTTCAGCTACTTTTGGACAAGATATATCAAACTAATTTGCGTGACGTTGTTTGTTGTGCATGGAGCAGGGTGCTTCTACTTTTGGATGGCAACTCGTTACAAAGATTCAGCAAACACGTGGATTGGAGTGGAAGTCCCGGACTTTGAGCTGCAAAGCATCTGGATCTGCTATACTTACTCCATTTACTGGTCTATTGTCACCCTTGCTACAGTCGGCTATGGCGACCTGCACGCAGTCAATATGGGGGAGAAGATATTTAGCATCTTCTACATGCTCTTCAACATCAGCCTCACGGCTTATTTGATTGGCAACATGACAAATCTAATCGTTCACAGTGCTGTTCGAACCTTTGCCATGAGAGATGCAATCCATGAGATACTAAGATATGCAAGCAAGAGTAGGCTACCAGACGGGCTAAAAGCCCAAATGCTGGCACACATGCAGCTCAAGTTCAAGACAGCAGAACTGCAGCAAGCAGAGGTGCTTGGGGACTTGCCTAAAGCAATAAGATCAAGCATTGCTCAGCACCTGTTTCGAAGAACAGTGGAAGATGCATACCTATTCAAGGGAGTCTCTGAAGATCTGATTGTGCAATCGGTAGCAGAGATGAAAGCTGAATATTTTCCACCCAAAGTCGATATTATATTGCAAAACGAGATACCCACAGATTTCTACATTTTGGTATCTGGATCAGTGGTATGTAGCATCTTGTACTTTTCATATCATATTCTAACAAGACTAGGACCCGGAGACATGGCAGGAGAAATTGGGGTACTATTTAATATTCCACAACCTTTTACAGTAAGAACAAAGAGGCTTTCTCAGGTTGTGCGCATCAGTCATCATAATATCAAGCAGATGATACAACCACACAGTGATGGGAAGATAATTATCTCTAACTTCATACAGTATTTGAAGGGCTTGAAACAAGAGTTGCTTGATGAAATACCATATCTCAAGGACTTGCTTGGTGACTTGAGTATAGAGGTTTGTTTTTTGTTCATATTTCTGGCTACAAACTTTGTATGTGACAATTGTAACTTACAAAACATCTTTAAGAAGGCATGTTTGTGA 1662 42.96 MTTLSSSETRSPFPLLFRRHSSGEIRNLTSVSSSLLPAFGTVVDEGYLHLRKFIIVPYDRRYRRLWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLVVDGFFAIDIVLTFFVAYLDKSTYLLVDDHKKIARRYLTSLWFPMDVASTLPYQIIYRIFTGDLHNGETFGFLNFLRFWRLRRVSQLFARLEKDTRFSYFWTRYIKLICVTLFVVHGAGCFYFWMATRYKDSANTWIGVEVPDFELQSIWICYTYSIYWSIVTLATVGYGDLHAVNMGEKIFSIFYMLFNISLTAYLIGNMTNLIVHSAVRTFAMRDAIHEILRYASKSRLPDGLKAQMLAHMQLKFKTAELQQAEVLGDLPKAIRSSIAQHLFRRTVEDAYLFKGVSEDLIVQSVAEMKAEYFPPKVDIILQNEIPTDFYILVSGSVVCSILYFSYHILTRLGPGDMAGEIGVLFNIPQPFTVRTKRLSQVVRISHHNIKQMIQPHSDGKIIISNFIQYLKGLKQELLDEIPYLKDLLGDLSIEVCFLFIFLATNFVCDNCNLQNIFKKACL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34445562 34451810 + Bda002755.1 Bda01g00717 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00717 553 PRINTS EAG/ELK/ERG potassium channel family signature 279 290 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda01g00717 553 PRINTS EAG/ELK/ERG potassium channel family signature 297 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda01g00717 553 PRINTS EAG/ELK/ERG potassium channel family signature 99 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda01g00717 553 PRINTS EAG/ELK/ERG potassium channel family signature 253 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda01g00717 553 PRINTS EAG/ELK/ERG potassium channel family signature 110 119 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda01g00717 553 SMART cnmp_10 383 499 IPR000595 -
Bda01g00717 553 Pfam Cyclic nucleotide-binding domain 403 485 IPR000595 -
Bda01g00717 553 PANTHER POTASSIUM CHANNEL AKT1 4 63 IPR045319 GO:0005249|GO:0006813
Bda01g00717 553 SUPERFAMILY cAMP-binding domain-like 312 489 IPR018490 -
Bda01g00717 553 Pfam Ion transport protein 64 309 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda01g00717 553 ProSiteProfiles cAMP/cGMP binding motif profile. 383 489 IPR000595 -
Bda01g00717 553 Gene3D Jelly Rolls 351 515 IPR014710 -
Bda01g00717 553 CDD CAP_ED 383 489 IPR000595 -
Bda01g00717 553 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 4 63 - -
Bda01g00717 553 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 65 525 - -
Bda01g00717 553 Gene3D - 64 307 - -
Bda01g00717 553 SUPERFAMILY Voltage-gated potassium channels 61 306 - -
Bda01g00717 553 PANTHER POTASSIUM CHANNEL AKT1 65 525 IPR045319 GO:0005249|GO:0006813
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00717 Bda01g01551 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00717 Bda-Chr1:34445562 Bda09g01174 Bda-Chr9:42587681 4.26E-175 dispersed
Bda01g00717 Bda-Chr1:34445562 Bda03g00048 Bda-Chr3:613252 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00717 K21867 - csin:114306787 815.453