Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00720 ATGGGGGATGCAGCAATTCATTCTAATGGTGCAATTGTGGAGTTAGAAGAGATGGAACATTTAATCTGCAAAGAAGACAAAACAAAGGCTATTTATTCTGACATACAGGATTGCCACCATAAGCGTAATGAAGAATCTGAAGATTGTACAAAAATCAATGAGCTTTTGGAGAGGGGATTTCTGCAATATGGATGTCCGCATTACAAGAGGAGATGCCGGATCAGAGCCCCTTGTTGCAATGAAATCTTTGATTGCCGTCACTGTCATAATGAGACTAAAAATAGTATTGATTTTGATCCAAAGGAAAGACATGACATTCCACGTCATCAAGTCAAACAAGTAATCTGCTCACTTTGTGGCACGGAACAAGAGGTTCGGCAGGTTTGCATCAAATGTGGTGTTTGTATGGGGAAATACTTCTGTGAGTCCTGCAAGCTGTTTGATGATGACACATCCAAAAATCAGTATCACTGTGATGGTTGTGGAATTTGTAGAATTGGCGGCCGTGAGAATTTTTTCCATTGCTACAAGTGTGGTTGCTGCTACTCAATTCTTCTGAAAAATAGTCACCCTTGTGTAGAAGGAGCAATGCATCACGACTGCCCTGTTTGTTTTGAGTTTCTGTTCGAGACTAGGAATGATGTTACTGTTTTGCCATGTGGACATACTATTCACAAAAACTGCCTGAAGGAGATGAGAGATCACTTCCAATACGTTTGCCCTCTCTGCTCCAAGTCAGTTTGTGACATGTCCAAAGTATGGGAAAAATTTGACCTGGAAATTGCAGCTACGCCAATGCCCGAGGCTTATCAGAACAAAAGAGTTTGGATACTCTGCAATGACTGTGGAAAGACATCTCAAGTGCAGTACCATGCTGTTGCTCAGAAGTGCTTGAATTGCAAGTCCTACAACACTCGGCAGACAAGAGGTTAA 933 41.69 MGDAAIHSNGAIVELEEMEHLICKEDKTKAIYSDIQDCHHKRNEESEDCTKINELLERGFLQYGCPHYKRRCRIRAPCCNEIFDCRHCHNETKNSIDFDPKERHDIPRHQVKQVICSLCGTEQEVRQVCIKCGVCMGKYFCESCKLFDDDTSKNQYHCDGCGICRIGGRENFFHCYKCGCCYSILLKNSHPCVEGAMHHDCPVCFEFLFETRNDVTVLPCGHTIHKNCLKEMRDHFQYVCPLCSKSVCDMSKVWEKFDLEIAATPMPEAYQNKRVWILCNDCGKTSQVQYHAVAQKCLNCKSYNTRQTRG 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34480854 34483136 - Bda002758.2 Bda01g00720 720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00720 310 Gene3D - 272 310 - -
Bda01g00720 310 SMART ring_2 201 243 IPR001841 -
Bda01g00720 310 Pfam CHY zinc finger 65 146 IPR008913 GO:0008270
Bda01g00720 310 SUPERFAMILY CHY zinc finger-like 62 136 IPR037274 GO:0008270
Bda01g00720 310 ProSiteProfiles Zinc finger CHY-type profile. 58 134 IPR008913 GO:0008270
Bda01g00720 310 SUPERFAMILY Zinc hairpin stack 137 194 IPR037275 -
Bda01g00720 310 SUPERFAMILY RING/U-box 200 249 - -
Bda01g00720 310 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 25 310 - -
Bda01g00720 310 Pfam Zinc-ribbon 248 306 IPR039512 -
Bda01g00720 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 246 IPR013083 -
Bda01g00720 310 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 310 - -
Bda01g00720 310 ProSiteProfiles Zinc finger CTCHY-type profile. 136 200 IPR017921 -
Bda01g00720 310 Pfam Ring finger domain 200 243 IPR001841 -
Bda01g00720 310 ProSiteProfiles Zinc finger RING-type profile. 201 244 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00720 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - qsu:111998243 531.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00720 Bda-Chr1:34480854 Bda02g00731 Bda-Chr2:48137037 3.48E-124 dispersed
Bda01g00720 Bda-Chr1:34480854 Bda08g00283 Bda-Chr8:2941588 2.60E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g389 Blo01g01360 . Bda01g00720 . . . . Bma01g02148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000646 2 6 1 2 2 3 4 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 4 3 3 4 3 8 4 3 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00720 Bda_Chr01 FPKM 1.755486 2.791664 10.240031 9.583473 0.0 0.0 0.0 0.0 0.0