Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00723 ATGGGCGTAGATTACTACAACATTTTGAAGGTAAATAGGAATGCAACCGACGATGATCTCAAGAAGGCGTATCGAAGGTTAGCTATGAAATGGCACCCTGATAAGAACCCCAACAACAAGAAAGAAGCTGAAGCCAAATTCAAGCAGATCTCCGAAGCCTATGAGGTCTTAAGCGACCCTCAGAAAAAGGCAATTTATGATCAGTATGGGGAAGAAGGGTTGAAAGACATGCCACCGCCGGGCAGCGGTGGATTCCCGTTTGGAAGTGGAGGCGGAGGTGGGTCAAGTGGATACAACCCTAGAAATGCAGAGGATATCTTTGCTGAATTTTTCGGAAGTAGCCCTTTTGGCTTTGGTTCTTCAGGTCCTGGAAGATCTATGAGATTCCAGTCAGATGGAGGAACTTTTGGGGCATTCGGAGGCGAAAAAATTTTCAGAACATACAGCGAGAGCGTTGTGCCAAAAAAACCCCAACCCGTGGAGAGCAAATTGCCTTGCAGTCTCGAGGAGCTGTATTCTGGATCAACAAGGAAAATGAAGATATCAAGGACCATTGTTGATGCCAATGGACGTCAAGTGCCAGAAACGGAGATATTGACAATCGAAGTGAAGCCGGGTTGGAAGAAAGGCACGAAGATCACTTTCCCGGATAAAGGGAATGAACAGCCCAACCAACTTCCGGCAGACTTGGTGTTTGTAATTGACGAGAAGCCTCACAAGGATTTCCAGAGAGATAGTAACGATCTGACTATGAATTACAAGGTTTCATTAGCAGAAGCTCTTGGTGGGACCACCGTAAAACTCACAACGCTGGACGGTCGTGATCTGTCGATCCCTGTGACTGACATTGTGAGCCCGGGCTACGAGCTCGTGATTGCAAGAGAAGGAATGCCGATAGTGAAAGAACCCGGAAACAGGGGTGACCTCAGGATCAAATTTGAGGTGAGTTTCCCCACAAGATTGTCTGCTGACCAACGTGCAGGCCTGAAGCAGGCGCTAGGGGGTTGA 1008 47.82 MGVDYYNILKVNRNATDDDLKKAYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKAIYDQYGEEGLKDMPPPGSGGFPFGSGGGGGSSGYNPRNAEDIFAEFFGSSPFGFGSSGPGRSMRFQSDGGTFGAFGGEKIFRTYSESVVPKKPQPVESKLPCSLEELYSGSTRKMKISRTIVDANGRQVPETEILTIEVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHKDFQRDSNDLTMNYKVSLAEALGGTTVKLTTLDGRDLSIPVTDIVSPGYELVIAREGMPIVKEPGNRGDLRIKFEVSFPTRLSADQRAGLKQALGG 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34509714 34511135 + Bda002760.1 Bda01g00723 723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00723 335 CDD DnaJ_C 158 321 - -
Bda01g00723 335 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 335 - -
Bda01g00723 335 SUPERFAMILY Chaperone J-domain 3 113 IPR036869 -
Bda01g00723 335 Pfam DnaJ domain 4 67 IPR001623 -
Bda01g00723 335 CDD DnaJ 4 59 IPR001623 -
Bda01g00723 335 Gene3D - 158 237 - -
Bda01g00723 335 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 327 IPR008971 GO:0006457|GO:0051082
Bda01g00723 335 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Bda01g00723 335 MobiDBLite consensus disorder prediction 75 99 - -
Bda01g00723 335 Gene3D DnaJ domain 3 121 IPR036869 -
Bda01g00723 335 PRINTS DnaJ domain signature 6 24 IPR001623 -
Bda01g00723 335 PRINTS DnaJ domain signature 24 39 IPR001623 -
Bda01g00723 335 PRINTS DnaJ domain signature 42 62 IPR001623 -
Bda01g00723 335 PRINTS DnaJ domain signature 62 81 IPR001623 -
Bda01g00723 335 SMART dnaj_3 3 62 IPR001623 -
Bda01g00723 335 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Bda01g00723 335 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Bda01g00723 335 Gene3D - 238 334 - -
Bda01g00723 335 SUPERFAMILY HSP40/DnaJ peptide-binding domain 159 240 IPR008971 GO:0006457|GO:0051082
Bda01g00723 335 Pfam DnaJ C terminal domain 160 318 IPR002939 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00723 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101204033 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00723 Bda-Chr1:34509714 Bda13g00607 Bda-Chr13:7076504 1.19E-144 dispersed
Bda08g01339 Bda-Chr8:53732583 Bda01g00723 Bda-Chr1:34509714 5.47E-07 dispersed
Bda14g00402 Bda-Chr14:2870135 Bda01g00723 Bda-Chr1:34509714 1.13E-49 dispersed
Bda14g01481 Bda-Chr14:22133034 Bda01g00723 Bda-Chr1:34509714 3.43E-11 dispersed
Bda01g00723 Bda-Chr1:34509714 Bda10g01039 Bda-Chr10:44460734 1.44E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g373 Blo01g01363 . Bda01g00723 . . . . Bma01g02150 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1734 . . . . Chy04g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007809 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00723 Bda_Chr01 FPKM 74.867203 78.157143 42.433773 45.946957 14.276855 12.661992 12.5736 18.598013 18.549116