Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00725 ATGAATAAAGAGAATACTGCTGCCAAAGTTGAAGAGTCTATTATCCGAGTCGCACGTGCAAGGACTAAAGCCTTAAGCACCTTAGCCGGGAACGCTCGCTCCTCCAAACCTCATTTGAAGGGTCCAATGAATGTCTCCCGAGCAAAGTTTAAAAGAGCTGCACCAGACGAGAGTAAAATTTCTGCACCTGCCATCACTGTTATTCAGCGTAAGAGGAGGGCCATCTTGAGGGATGTAACTAACACTTTTTGTGAAAGTTCACATACTACCTGCATCAATACCTCAAAAATAAAAATTAACGAGTCGACTGTTAGAGGTCCTGCAAAATTTCATGCGAAGGTGCCATTGGATGCCTCTATAAATGTTCCTAAAGCGCCAGATGATCCAAAGACAAAATTAGCTGAAGATTTATCCAAAATAAGGATGGCAGAAGTGGAAGAAATTCCCTTATTGGCAAGGAATGAAGAAGAAGGAAATATTTTGCAAAATACTTACCCATGCATCAAATGTGGCTTCGGTGATATGGCATTTCCTATATCTGTTGGACTGCAAAGATTTCAAAACAAAGAAGAATATTTTCCTGGCAAGAATATGGAATCCTCTAATCATATCTGCATCGTGGACATTGATTCAAGCTCAATGGATCCCCAAGATTGCAGTATATACGCCTCTGACATATACAAGATGATACGAATAACAGAGCTTGACCACAGACCATCAACTAATTATATGGAACAATTGCAGCGAGATATTACTGTGAACATGAGAGGAATTTTAATCGATTGGCTTGTTGAGGTATCTGAAGAGTATAAGTTGGCTCTTGATACACTATATCTCACTGCAAATATCATTGATCGATTTCTCTCTAAAAGTTATATTGAAAAACAAAAATTGCAGCTCCTTGGAGTTACTTGTTTGCTAATTGCCTCAAAATATGAAGAGATCTGTTCACCGCCGGTGGAAGAATTCTGTTTCATTACTGACAATACTTACACAAAAGGACAGGTTTTAGAGATGGAGAGTGAAGTCTTGAACTTAATCCACTTTCAGCTATCAGTTCCTACTGCAAAAACATTTCTTAGGAGATTTATTCAAGTTGCGCAAACTGGTTCCAAGGTTCCTTGTGTGGAATTAGAGTATTTGGCTGACTATTTAGCGGAGTTGACTCTTGTTGACTATAATTTCTTAAAGTTCCTGCCTTCTTTGATAGCTGCATCTGCGGTATTCCTTGCCAAATGGACACTTAACCAATCAAATCATCCATGGAGTCCAATTCTAGTGCATTATACCACATACAACACTTCAGAGCTGAAAACTACAGTACTCGCCTTGGAAAATTTACAACTCAACACTGATGATTCCTCCTTAAATGCTATTCGTGAGAAGTACGGACAACAAAAGGTTCGGTTGACTTGA 1416 39.12 MNKENTAAKVEESIIRVARARTKALSTLAGNARSSKPHLKGPMNVSRAKFKRAAPDESKISAPAITVIQRKRRAILRDVTNTFCESSHTTCINTSKIKINESTVRGPAKFHAKVPLDASINVPKAPDDPKTKLAEDLSKIRMAEVEEIPLLARNEEEGNILQNTYPCIKCGFGDMAFPISVGLQRFQNKEEYFPGKNMESSNHICIVDIDSSSMDPQDCSIYASDIYKMIRITELDHRPSTNYMEQLQRDITVNMRGILIDWLVEVSEEYKLALDTLYLTANIIDRFLSKSYIEKQKLQLLGVTCLLIASKYEEICSPPVEEFCFITDNTYTKGQVLEMESEVLNLIHFQLSVPTAKTFLRRFIQVAQTGSKVPCVELEYLADYLAELTLVDYNFLKFLPSLIAASAVFLAKWTLNQSNHPWSPILVHYTTYNTSELKTTVLALENLQLNTDDSSLNAIREKYGQQKVRLT 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34532308 34536358 - Bda002762.1 Bda01g00725 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00725 471 PANTHER CYCLINS 50 468 IPR039361 -
Bda01g00725 471 PANTHER CYCLIN-A2-4 50 468 - -
Bda01g00725 471 SUPERFAMILY Cyclin-like 215 351 IPR036915 -
Bda01g00725 471 Gene3D - 239 352 - -
Bda01g00725 471 Pfam Cyclin, N-terminal domain 225 351 IPR006671 -
Bda01g00725 471 SUPERFAMILY Cyclin-like 353 467 IPR036915 -
Bda01g00725 471 SMART Cyclin_C_2 354 471 IPR004367 -
Bda01g00725 471 CDD CYCLIN 255 344 IPR013763 -
Bda01g00725 471 SMART cyclin_7 261 345 IPR013763 -
Bda01g00725 471 SMART cyclin_7 358 446 IPR013763 -
Bda01g00725 471 Gene3D - 225 468 - -
Bda01g00725 471 CDD CYCLIN 352 444 IPR013763 -
Bda01g00725 471 Pfam Cyclin, C-terminal domain 354 468 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00725 Bda-Chr1:34532308 Bda01g01446 Bda-Chr1:50385131 6.92E-103 dispersed
Bda11g01814 Bda-Chr11:53300178 Bda01g00725 Bda-Chr1:34532308 5.83E-57 dispersed
Bda01g00725 Bda-Chr1:34532308 Bda03g00056 Bda-Chr3:687131 1.00E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00725 K06627 - rcu:8272367 524.628