Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00731 ATGAGGTTTAAGAAAGGTAGTAAAGTGGAGGTCTTACACCAAAAATCTCCAGGTGCGTGGTATTGTGCTGAGATTATTTCTGGCAATGGTCATACATATAGTGTTCGATATGAATATCCTACCATTGATGGTAATACAATTGTGGAGAGGATATCAAGGAAGGCTATCAGGCCCTGTCCCCCTCTGGAAAGTTTGAATGATTTGGTGACTGGAGTTCTTACTGAGGCTTTGATTTGTGGCGTTTGGAAGGTAGCTGTGATTTTGAAGGTTTTGAGCGGAGACTGTTATTTGGTGAGGTTAGTTGGGTCTCTTGAAGAATACAGAGCCCACAAATCTCACATCCGTCCCCGTCAAACTTGGCAGGATGGCATATGGTTTGTCACTGGAAAGATTGACTCAAAGCTCCCACATATTGGCACGAGAAGTAAGCTTAATGAAGGAATTGCATTTCCTTTTCAGGAAAACATTGATTTTGAAACGTGTGATTTTGGCTCATCAAGGACATTAAAAAGATCTCATTCTTCTTGTTCATCTCACATTGGAACATATCCCATAAAATTTAGACGTGTGGAGAAAGAGAGAAGAAGCAAACAATTTATATCAGGATCCTCATTTCCCTTTTCTGATAAGGTAGATGCTGGTGATTCATTACAAGAAAATCTGGGTGTAAAATACTTGAATATTTCTTTTAACAACGAAACTGCAAATTATTTGGAAACAGAGAAAGGAGATACTTATGGTGGTATTTCTTGTGTTCCGAAGAGAAGCAGAAAAGCTATTGACTATGATAGTGATATATGTTCTGTTGGTAGTTGTAATGTTGTTTATAACAGTTCAGATCCATTGGATGCAGATGCTCTTTATAGTGAAGCAGAATATTCTCATGAATGTCGAGAAGAAAGTTCTTATGTCCCCTTAATTGGGAATGAAAGAGAGAGAATACATGGATTAGAACTACAAGCTTATCGCAGTACTTTAGTGGCTCTACATGCTTCTGGGCCCTTGAGTTGGGAACAAGAAGCTCTGTTAACGAATCTTCGTATTTCCCTCCATATATCCCATGATGAATACTGGTTAGAGCTAAAAAACCTGATTTCTTCTGAACATTGA 1110 38.56 MRFKKGSKVEVLHQKSPGAWYCAEIISGNGHTYSVRYEYPTIDGNTIVERISRKAIRPCPPLESLNDLVTGVLTEALICGVWKVAVILKVLSGDCYLVRLVGSLEEYRAHKSHIRPRQTWQDGIWFVTGKIDSKLPHIGTRSKLNEGIAFPFQENIDFETCDFGSSRTLKRSHSSCSSHIGTYPIKFRRVEKERRSKQFISGSSFPFSDKVDAGDSLQENLGVKYLNISFNNETANYLETEKGDTYGGISCVPKRSRKAIDYDSDICSVGSCNVVYNSSDPLDADALYSEAEYSHECREESSYVPLIGNERERIHGLELQAYRSTLVALHASGPLSWEQEALLTNLRISLHISHDEYWLELKNLISSEH 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34621278 34623582 - Bda002770.1 Bda01g00731 731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00731 369 SUPERFAMILY ENT-like 310 368 IPR036142 -
Bda01g00731 369 Pfam Agenet domain 6 61 IPR008395 -
Bda01g00731 369 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 238 - -
Bda01g00731 369 Gene3D ENT domain 308 369 IPR036142 -
Bda01g00731 369 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 310 369 IPR005491 -
Bda01g00731 369 PANTHER PLANT TUDOR-LIKE RNA-BINDING PROTEIN-RELATED 1 238 - -
Bda01g00731 369 SMART ENT_2 310 369 IPR005491 -
Bda01g00731 369 Pfam ENT domain 312 363 IPR005491 -
Bda01g00731 369 SMART agenet_At_2 66 122 IPR014002 -
Bda01g00731 369 SMART agenet_At_2 1 64 IPR014002 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00731 - - - zju:107421236 314.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00731 Bda03g00064 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00731 Bda-Chr1:34621278 Bda03g00064 Bda-Chr3:713785 9.88E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g441 . Blo12g01083 Bda01g00731 Bda03g00064 . Bpe02g00575 Bma04g00062 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1809 Cone7ag1719 . . . . . . . . . . . Bpe04g00050 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000990 2 11 1 3 2 2 4 1 2 2 1 2 4 2 2 4 2 2 3 2 2 2 2 1 2 2 2 10 4 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00731 Bda_Chr01 FPKM 4.219512 6.972979 1.154863 0.0 4.456327 7.288329 8.723307 0.594056 0.320375