Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g00732 ATGAGAACTTCGTCAACTTCCCCTTTGGTGTTCCGGTCGTTGTTAAACCCTAGGACAATCTGTTCGCAATCCGGAACTCCCGTTAAAGTTGTCCGGGAACTGGCACCCGTCGAAGACGCCTCAGAAGTCGATATAGAATCTGATGTAGGAAAATACGGCAATCCTAGATCACTTGATTCACATTTATCGTCGTGCGATGCTGTCAATGGTCTGCTTAGCCGGAAAAGCGATCCTACAGCAGCTTTGAAGTACTTTAAATGGGCTGAGCGACGGCGAGGCTTTGTTAAAGGCGTCGACGCTTTCTGCGTTTTACTTCACATTTTGATGAGTTTTCCGGAGACTCGTAAGGATGCTCGGCATTTGTTGAATCAGTTCAATTTCGGTGATTCGGGTCCCACACCTGCTCATCTTGTAGATAACTTGGTAGAAATAGTAGAAAGGTTTGGTTTTTCATTCGATCTGGATATTTTAAATTATTTGTTGAATAGCTATATTAGAGCTAACAGAATCAAAGATGCTATTCATTGTTTTAATAGAATTATAGAGTCTAATATATCTCCGGGGGTTCCATATTTGAATATTCTTTTTGCGACTCTGGTAAGGAGAAAGATGATTGATGAAGCGCGAGATTTGCATTTGAAAATGATTTCTAATGGAATTAGAGGCGATTGTGTTACATTACACATAATTATGCGTGCTTGTTTGAAGGAAGGGAAGCCTGAGGAGGCAGAGAAATACTTTGAAGAAGCCAAAGCTAGAAACCTGGAGCTTGATGCAGCCACATATAGCATTTACATCCAGGCTGTCTGCAAGAGACCCAATTCGAGAATGGCTTCTGAGTTGTTAAAGGAGATGAGAGAAAAGGGTTGGACCCCTTCTGAGGGTACATATACAGTTGTTATCAGAGCCTGCATGAAGCAGGGAAATCTGGCTGAAGGGTTGAGATTGAAGGATGAGATGGTCGGTTCTTGCAAGTCGATAAATTTGGCTGTCATGACAAGTTTGATGAAAGGGTATTGTCTGAAAGGTGAAGTGTACAGTGCGCTCAATCTATTAAATGAATTTGTTGAGTATGGACTTACTCCTAACAATATAACGTACTCAGTTTTGATCGATGGGTGCTGTAAGAATGGGAACTTGGAAGAGGCTCTTAAACTTTACTCAAAAATGAAAATCGAGGGTATTAAACCAAGTGTCTTTATAGTAAACGCCATCATAAGGGGATTCTTGAAATTGAAGTCCAGGGAAGATGCATATAAGATCTTTGATGAAGCAGTTGAAAGTGGGACAGCTAATGTTTTCACATATAATAATCTTTTGTACTGGTTTTGCAAAGAGGGTAATGAAAATGAAGCTGTCAGTTTATGGGACAGGATGATGAACAGGAGAGTGGTACCTAGTATAGCCTCATATAACAACATGATTCTGTGCCACTGCAGAAAAGGGAATATGGATAAAGCATCCCATATGTTCTCTCAGATGCTCGAGAGGGGTTTAAAGCCAAACGTAATTACATTTTCAGTTTTAATGGATGGTCATTTCACGAATGGTGAACCAGATAGCGCCATTGACGTTTTTGACAAAATGGTTGGTGCTAAAATTTCCCCGACAGATATTACAATCAATACTGTGATCAATGGCTTATGCAAAGCTGGTCAAACATCTGATGGAGTTGATATGTTAAATAAATTTGTGGCGATGGGTTTTATTCCCATGTGCATGACATACAACAGCATTATCGATGGATTTGTAAAGGAAGGTGCAATCAATTCCGCCTTGGCCATTTATAGAGATATGTGTGAAGATGGAATTTCTCCAAATGTGGTCACCTACACTACCTTGATCGATGGCTTTTGCAAAAGTAATAATATCGATCTTGCTTTAAAAATGCGGAACGAGATGCATAGTAAGGGCCTCGTATTGGATCTTACTGCCTATGGCTCTCTCATTGATGGTTTCTGTAAGAGGCAAGAGATGAAAATTGCATCTTACCTTTTTGCCGAACTCCTCGAAGTCGGTTTATCTCCAAATTCGGTAATTTACAATAGCATGATTTGGGGCTTCAGAAATATTAAGAACATGGAAGCAGCTCTTGACTTGTATAAGAAAATGATAAGTCAAGGAATACCTTGTGATTTACTGACTTACACTACATTAATTGATGGATTGCTTAAAGAGGGTAACTTAGGCTTTGCATCAGAGCTTTACTCAGAGATGCTTTCTAGAGATATTGTGCCTGATAATGTCACCCATACCGTTCTGGTCAATGGCCTTTGCAATGAAGTGCAGGTAGAGAACGCTCAGAAGATCTTGGAAGAGATGGATCGGAAAGGTATCACTCCGAATGTTCTCATTTATAACACCTTGATTGCTGGGCACTTCAAAGCGGGGAATTTACTGGAGGCATTCAGGATGCACGATGAGATGCTCGATCGAGGTCTTGTTCCGGATGAAACCACTTACGATATTCTTGTGAGTGGACGCTTCAAAAGGAGGCAAAACTCGAACTGGATTCTTGAGTGTGCAAATTAA 2532 40.56 MRTSSTSPLVFRSLLNPRTICSQSGTPVKVVRELAPVEDASEVDIESDVGKYGNPRSLDSHLSSCDAVNGLLSRKSDPTAALKYFKWAERRRGFVKGVDAFCVLLHILMSFPETRKDARHLLNQFNFGDSGPTPAHLVDNLVEIVERFGFSFDLDILNYLLNSYIRANRIKDAIHCFNRIIESNISPGVPYLNILFATLVRRKMIDEARDLHLKMISNGIRGDCVTLHIIMRACLKEGKPEEAEKYFEEAKARNLELDAATYSIYIQAVCKRPNSRMASELLKEMREKGWTPSEGTYTVVIRACMKQGNLAEGLRLKDEMVGSCKSINLAVMTSLMKGYCLKGEVYSALNLLNEFVEYGLTPNNITYSVLIDGCCKNGNLEEALKLYSKMKIEGIKPSVFIVNAIIRGFLKLKSREDAYKIFDEAVESGTANVFTYNNLLYWFCKEGNENEAVSLWDRMMNRRVVPSIASYNNMILCHCRKGNMDKASHMFSQMLERGLKPNVITFSVLMDGHFTNGEPDSAIDVFDKMVGAKISPTDITINTVINGLCKAGQTSDGVDMLNKFVAMGFIPMCMTYNSIIDGFVKEGAINSALAIYRDMCEDGISPNVVTYTTLIDGFCKSNNIDLALKMRNEMHSKGLVLDLTAYGSLIDGFCKRQEMKIASYLFAELLEVGLSPNSVIYNSMIWGFRNIKNMEAALDLYKKMISQGIPCDLLTYTTLIDGLLKEGNLGFASELYSEMLSRDIVPDNVTHTVLVNGLCNEVQVENAQKILEEMDRKGITPNVLIYNTLIAGHFKAGNLLEAFRMHDEMLDRGLVPDETTYDILVSGRFKRRQNSNWILECAN 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34626310 34628841 - Bda002771.1 Bda01g00732 732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Bda01g00732 843 SUPERFAMILY HCP-like 613 812 - -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Bda01g00732 843 Gene3D Tetratricopeptide repeat domain 53 200 IPR011990 GO:0005515
Bda01g00732 843 Gene3D Tetratricopeptide repeat domain 557 658 IPR011990 GO:0005515
Bda01g00732 843 Gene3D Tetratricopeptide repeat domain 659 763 IPR011990 GO:0005515
Bda01g00732 843 Gene3D Tetratricopeptide repeat domain 764 838 IPR011990 GO:0005515
Bda01g00732 843 Gene3D Tetratricopeptide repeat domain 448 556 IPR011990 GO:0005515
Bda01g00732 843 Gene3D Tetratricopeptide repeat domain 332 447 IPR011990 GO:0005515
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 747 781 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Bda01g00732 843 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 50 835 - -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 193 220 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 402 429 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 540 569 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 296 322 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 645 673 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 158 185 IPR002885 -
Bda01g00732 843 Gene3D Tetratricopeptide repeat domain 202 331 IPR011990 GO:0005515
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 677 711 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 158 188 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 715 747 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 434 467 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 609 642 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 749 783 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 679 712 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 645 677 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 504 537 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 365 399 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 193 223 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 333 363 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 575 608 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 225 259 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 539 571 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 785 818 IPR002885 -
Bda01g00732 843 TIGRFAM PPR: pentatricopeptide repeat domain 296 321 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 743 774 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 432 459 IPR002885 -
Bda01g00732 843 Pfam PPR repeat 359 391 IPR002885 -
Bda01g00732 843 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 50 835 - -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Bda01g00732 843 SUPERFAMILY TPR-like 157 257 IPR011990 GO:0005515
Bda01g00732 843 Pfam PPR repeat family 225 271 IPR002885 -
Bda01g00732 843 Pfam PPR repeat family 466 513 IPR002885 -
Bda01g00732 843 Pfam PPR repeat family 676 725 IPR002885 -
Bda01g00732 843 Pfam PPR repeat family 574 620 IPR002885 -
Bda01g00732 843 Pfam PPR repeat family 781 827 IPR002885 -
Bda01g00732 843 SUPERFAMILY HCP-like 376 604 - -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 782 816 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 712 746 IPR002885 -
Bda01g00732 843 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 323 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g00732 - - K15336 qlo:115991712 1044.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00732 Bda-Chr1:34626310 Bda07g00761 Bda-Chr7:9033063 1.43E-77 dispersed
Bda07g01660 Bda-Chr7:30854191 Bda01g00732 Bda-Chr1:34626310 1.58E-09 dispersed
Bda01g00732 Bda-Chr1:34626310 Bda10g00563 Bda-Chr10:39624188 4.74E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g442 . . Bda01g00732 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005083 1 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g00732 Bda_Chr01 FPKM 10.172132 11.133787 1.956951 1.499182 15.344028 17.226721 15.55205 1.15089 1.604044